This file is indexed.

/usr/share/ncbi/data/KSmtk.mat is in ncbi-data 6.1.20120620-8.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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;Old MTK
A    1.297   1.551   1.084   2.612   0.377   1.248   0.877
C    0.824   0.022   0.308   0.152   0.180   0.156   0.044
D    0.030   2.352   2.268   0.237   0.663   1.620   1.448
E    0.262   3.496   3.108   0.998   5.685   2.494   3.048
F    0.531   0.076   0.403   0.662   0.189   0.106   0.013
G    0.045   0.275   0.578   0.216   0.211   0.426   0.156
H    0.347   0.275   0.679   0.395   0.294   0.579   0.213
I    2.597   0.098   0.345   0.894   0.514   0.471   0.431
K    1.375   2.639   1.763   0.191   1.815   1.961   2.795
L    3.167   0.297   0.398   3.902   0.585   0.501   0.483
M    2.240   0.370   0.480   1.409   0.541   0.772   0.663
N    0.835   1.475   1.534   0.039   1.722   2.456   2.280
P    0.000   0.008   0.000   0.013   0.000   0.000   0.000
Q    0.179   2.114   1.778   0.631   2.550   1.578   2.526
R    0.659   1.163   1.210   0.031   1.358   1.937   1.798
S    0.382   0.583   1.052   0.419   0.525   0.916   0.628
T    0.169   0.702   0.955   0.654   0.791   0.843   0.647
V    1.665   0.403   0.386   0.949   0.211   0.342   0.360
W    0.240   0.000   0.000   0.456   0.019   0.000   0.000
Y    1.417   0.090   0.122   1.659   0.190   0.130   0.155