/usr/share/ncbi/data/KSkyte.flt is in ncbi-data 6.1.20120620-8.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 | ;Hydropathy ; 16 character descriptor
;2 ; 1=Nucleic 2=Protein
1 ; 1=Filter 2-64=No. Pos. in Matrix
19 ; 3-256=Filter Window 0-100=Percent Cutoff Matrix Output
1.800 A Ala
-3.500 BB Asx
2.500 C Cys Note: Columns 1-8 must contain 1 numeric value only
-3.500 D Asp
-3.500 E Glu Note: This file is required for amphpathic helic
2.800 F Phe
-0.400 G Gly
-3.200 H His
4.500 I Ile
-3.900 K Lys
3.800 L Leu
1.900 M Met
-3.500 N Asn
-1.600 P Pro
-3.500 Q Gln
-4.500 R Arg
-0.800 S Ser
-0.700 T Thr
4.200 V Val
-0.900 W Trp
-0.490 X- Unk
-1.300 Y Tyr
-3.500 ZZ Glx
-0.490 ** ***
;Hydropathy - Kyte and Doolittle (Hydrophobicity Index)
;A window of 19 residues is the published (and recomended) value
;for calculating the moving average to find membrane spanning regions
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