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<!DOCTYPE html PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
<html>
<head>
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<title>mialm Reference Manual: Landmarks in 3D space</title>
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<td width="100%" align="left" class="shortcuts">
<a href="#" class="shortcut">Top</a><span id="nav_description"> <span class="dim">|</span> 
                  <a href="#mialm-MiaLandmark.description" class="shortcut">Description</a></span><span id="nav_hierarchy"> <span class="dim">|</span> 
                  <a href="#mialm-MiaLandmark.object-hierarchy" class="shortcut">Object Hierarchy</a></span>
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<td><a accesskey="h" href="index.html"><img src="home.png" width="16" height="16" border="0" alt="Home"></a></td>
<td><a accesskey="u" href="ch01.html"><img src="up.png" width="16" height="16" border="0" alt="Up"></a></td>
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</tr></table>
<div class="refentry">
<a name="mialm-MiaLandmark"></a><div class="titlepage"></div>
<div class="refnamediv"><table width="100%"><tr>
<td valign="top">
<h2><span class="refentrytitle"><a name="mialm-MiaLandmark.top_of_page"></a>Landmarks in 3D space</span></h2>
<p>Landmarks in 3D space — Landmark description for gray scale volume data</p>
</td>
<td class="gallery_image" valign="top" align="right"></td>
</tr></table></div>
<div class="refsect1">
<a name="mialm-MiaLandmark.functions"></a><h2>Functions</h2>
<div class="informaltable"><table width="100%" border="0">
<colgroup>
<col width="150px" class="functions_return">
<col class="functions_name">
</colgroup>
<tbody>
<tr>
<td class="function_type">
<span class="returnvalue">MiaLandmark</span> *
</td>
<td class="function_name">
<a class="link" href="mialm-MiaLandmark.html#mia-landmark-new" title="mia_landmark_new ()">mia_landmark_new</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="mialm-MiaLandmark.html#mia-landmark-set-name" title="mia_landmark_set_name ()">mia_landmark_set_name</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">const <span class="returnvalue">gchar</span> *
</td>
<td class="function_name">
<a class="link" href="mialm-MiaLandmark.html#mia-landmark-get-name" title="mia_landmark_get_name ()">mia_landmark_get_name</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="mialm-MiaLandmark.html#mia-landmark-set-location" title="mia_landmark_set_location ()">mia_landmark_set_location</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<a class="link" href="mialm-MiaVector3d.html#MiaVector3d" title="struct MiaVector3d"><span class="returnvalue">MiaVector3d</span></a> *
</td>
<td class="function_name">
<a class="link" href="mialm-MiaLandmark.html#mia-landmark-get-location" title="mia_landmark_get_location ()">mia_landmark_get_location</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">gfloat</span>
</td>
<td class="function_name">
<a class="link" href="mialm-MiaLandmark.html#mia-landmark-get-iso-value" title="mia_landmark_get_iso_value ()">mia_landmark_get_iso_value</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="mialm-MiaLandmark.html#mia-landmark-set-iso-value" title="mia_landmark_set_iso_value ()">mia_landmark_set_iso_value</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="mialm-MiaLandmark.html#mia-landmark-set-camera" title="mia_landmark_set_camera ()">mia_landmark_set_camera</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">MiaCamera</span> *
</td>
<td class="function_name">
<a class="link" href="mialm-MiaLandmark.html#mia-landmark-get-camera" title="mia_landmark_get_camera ()">mia_landmark_get_camera</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">void</span>
</td>
<td class="function_name">
<a class="link" href="mialm-MiaLandmark.html#mia-landmark-set-picfile" title="mia_landmark_set_picfile ()">mia_landmark_set_picfile</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">const <span class="returnvalue">gchar</span> *
</td>
<td class="function_name">
<a class="link" href="mialm-MiaLandmark.html#mia-landmark-get-picfile" title="mia_landmark_get_picfile ()">mia_landmark_get_picfile</a> <span class="c_punctuation">()</span>
</td>
</tr>
<tr>
<td class="function_type">
<span class="returnvalue">gboolean</span>
</td>
<td class="function_name">
<a class="link" href="mialm-MiaLandmark.html#mia-landmark-xmlio-write" title="mia_landmark_xmlio_write ()">mia_landmark_xmlio_write</a> <span class="c_punctuation">()</span>
</td>
</tr>
</tbody>
</table></div>
</div>
<div class="refsect1">
<a name="mialm-MiaLandmark.object-hierarchy"></a><h2>Object Hierarchy</h2>
<pre class="screen">
</pre>
</div>
<div class="refsect1">
<a name="mialm-MiaLandmark.description"></a><h2>Description</h2>
<p><span class="type">MiaLandmarks</span> olds the location of a landmark in 3D space. In addition it comprises 
<span class="type">MiaCamera</span> that describes the best view for visualizing this landmark, and the intensity 
value in the grayscale data that corresponds to the landmark location and can, hence, be used to 
properly visualize the iso-surface is landmark can be found on. </p>
<p>In addition, an image file name can be provided that shows the landmark in its anatomical context 
in an example data set.</p>
</div>
<div class="refsect1">
<a name="mialm-MiaLandmark.functions_details"></a><h2>Functions</h2>
<div class="refsect2">
<a name="mia-landmark-new"></a><h3>mia_landmark_new ()</h3>
<pre class="programlisting"><span class="returnvalue">MiaLandmark</span> *
mia_landmark_new (<em class="parameter"><code>const <span class="type">gchar</span> *name</code></em>,
                  <em class="parameter"><code><a class="link" href="mialm-MiaVector3d.html#MiaVector3d" title="struct MiaVector3d"><span class="type">MiaVector3d</span></a> *location</code></em>,
                  <em class="parameter"><code><span class="type">float</span> iso</code></em>,
                  <em class="parameter"><code><span class="type">MiaCamera</span> *camera</code></em>,
                  <em class="parameter"><code><span class="type">gchar</span> *picfile</code></em>);</pre>
<p>Create a new landmark with the given characteristics.</p>
<div class="refsect3">
<a name="id-1.2.3.6.2.5"></a><h4>Parameters</h4>
<div class="informaltable"><table width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>name</p></td>
<td class="parameter_description"><p>Name of the newly created landmark </p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>location</p></td>
<td class="parameter_description"><p>3D coordinates of the landmark </p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>iso</p></td>
<td class="parameter_description"><p>intensity value corresponding to the 3D coordinates
in the visualized volume data set </p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>camera</p></td>
<td class="parameter_description"><p>viewing camera when marking the landmark </p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>picfile</p></td>
<td class="parameter_description"><p>image file to give an idea where to find the landmark</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<div class="refsect3">
<a name="id-1.2.3.6.2.6"></a><h4>Returns</h4>
<p> The newly created landmark</p>
<p></p>
</div>
</div>
<hr>
<div class="refsect2">
<a name="mia-landmark-set-name"></a><h3>mia_landmark_set_name ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
mia_landmark_set_name (<em class="parameter"><code><span class="type">MiaLandmark</span> *self</code></em>,
                       <em class="parameter"><code>const <span class="type">gchar</span> *name</code></em>);</pre>
<p>Rename the landmark.</p>
<div class="refsect3">
<a name="id-1.2.3.6.3.5"></a><h4>Parameters</h4>
<div class="informaltable"><table width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>self</p></td>
<td class="parameter_description"><p>a landmark </p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>name</p></td>
<td class="parameter_description"><p>the new name of the landmark </p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
</div>
<hr>
<div class="refsect2">
<a name="mia-landmark-get-name"></a><h3>mia_landmark_get_name ()</h3>
<pre class="programlisting">const <span class="returnvalue">gchar</span> *
mia_landmark_get_name (<em class="parameter"><code>const <span class="type">MiaLandmark</span> *self</code></em>);</pre>
<p>Get the name of the landmark.</p>
<div class="refsect3">
<a name="id-1.2.3.6.4.5"></a><h4>Parameters</h4>
<div class="informaltable"><table width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody><tr>
<td class="parameter_name"><p>self</p></td>
<td class="parameter_description"><p>a landmark </p></td>
<td class="parameter_annotations"> </td>
</tr></tbody>
</table></div>
</div>
<div class="refsect3">
<a name="id-1.2.3.6.4.6"></a><h4>Returns</h4>
<p> the name of the landmark as character string </p>
<p></p>
</div>
</div>
<hr>
<div class="refsect2">
<a name="mia-landmark-set-location"></a><h3>mia_landmark_set_location ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
mia_landmark_set_location (<em class="parameter"><code><span class="type">MiaLandmark</span> *self</code></em>,
                           <em class="parameter"><code><a class="link" href="mialm-MiaVector3d.html#MiaVector3d" title="struct MiaVector3d"><span class="type">MiaVector3d</span></a> *location</code></em>);</pre>
<p>Set a new location to the landmark. The old one is unreferenced.</p>
<div class="refsect3">
<a name="id-1.2.3.6.5.5"></a><h4>Parameters</h4>
<div class="informaltable"><table width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>self</p></td>
<td class="parameter_description"><p>a landmark </p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>location</p></td>
<td class="parameter_description"><p>the new location of the landmark </p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<div class="refsect3">
<a name="id-1.2.3.6.5.6"></a><h4>Returns</h4>
<p> a pointer to the location of the landmark</p>
<p></p>
</div>
</div>
<hr>
<div class="refsect2">
<a name="mia-landmark-get-location"></a><h3>mia_landmark_get_location ()</h3>
<pre class="programlisting"><a class="link" href="mialm-MiaVector3d.html#MiaVector3d" title="struct MiaVector3d"><span class="returnvalue">MiaVector3d</span></a> *
mia_landmark_get_location (<em class="parameter"><code>const <span class="type">MiaLandmark</span> *self</code></em>);</pre>
<p>Get the location of the landmark.</p>
<div class="refsect3">
<a name="id-1.2.3.6.6.5"></a><h4>Parameters</h4>
<div class="informaltable"><table width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody><tr>
<td class="parameter_name"><p>self</p></td>
<td class="parameter_description"><p>a landmark </p></td>
<td class="parameter_annotations"> </td>
</tr></tbody>
</table></div>
</div>
<div class="refsect3">
<a name="id-1.2.3.6.6.6"></a><h4>Returns</h4>
<p> a pointer to the location of the landmark</p>
<p></p>
</div>
</div>
<hr>
<div class="refsect2">
<a name="mia-landmark-get-iso-value"></a><h3>mia_landmark_get_iso_value ()</h3>
<pre class="programlisting"><span class="returnvalue">gfloat</span>
mia_landmark_get_iso_value (<em class="parameter"><code>const <span class="type">MiaLandmark</span> *self</code></em>);</pre>
<p>The iso value corresponds 
to in the intensity value that can be found at the  landmark location.</p>
<div class="refsect3">
<a name="id-1.2.3.6.7.5"></a><h4>Parameters</h4>
<div class="informaltable"><table width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody><tr>
<td class="parameter_name"><p>self</p></td>
<td class="parameter_description"><p>a landmark </p></td>
<td class="parameter_annotations"> </td>
</tr></tbody>
</table></div>
</div>
<div class="refsect3">
<a name="id-1.2.3.6.7.6"></a><h4>Returns</h4>
<p> a iso-surface intensity value </p>
<p></p>
</div>
</div>
<hr>
<div class="refsect2">
<a name="mia-landmark-set-iso-value"></a><h3>mia_landmark_set_iso_value ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
mia_landmark_set_iso_value (<em class="parameter"><code><span class="type">MiaLandmark</span> *self</code></em>,
                            <em class="parameter"><code><span class="type">gfloat</span> iso</code></em>);</pre>
<p>The iso value corresponds 
to in the intensity value that can be found at the  landmark location.</p>
<div class="refsect3">
<a name="id-1.2.3.6.8.5"></a><h4>Parameters</h4>
<div class="informaltable"><table width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>self</p></td>
<td class="parameter_description"><p>a landmark </p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>iso</p></td>
<td class="parameter_description"><p>the iso-surface intensity value  </p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
</div>
<hr>
<div class="refsect2">
<a name="mia-landmark-set-camera"></a><h3>mia_landmark_set_camera ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
mia_landmark_set_camera (<em class="parameter"><code><span class="type">MiaLandmark</span> *self</code></em>,
                         <em class="parameter"><code><span class="type">MiaCamera</span> *camera</code></em>);</pre>
<p>Sets the viewing camera for the landmark. The viewing camera defines 
a view that has the landmark in its viewing range.</p>
<div class="refsect3">
<a name="id-1.2.3.6.9.5"></a><h4>Parameters</h4>
<div class="informaltable"><table width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>self</p></td>
<td class="parameter_description"><p>a landmark </p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>camera</p></td>
<td class="parameter_description"><p>a camera   </p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
</div>
<hr>
<div class="refsect2">
<a name="mia-landmark-get-camera"></a><h3>mia_landmark_get_camera ()</h3>
<pre class="programlisting"><span class="returnvalue">MiaCamera</span> *
mia_landmark_get_camera (<em class="parameter"><code>const <span class="type">MiaLandmark</span> *self</code></em>);</pre>
<p>Get the camera defined for this landmark.</p>
<div class="refsect3">
<a name="id-1.2.3.6.10.5"></a><h4>Parameters</h4>
<div class="informaltable"><table width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody><tr>
<td class="parameter_name"><p>self</p></td>
<td class="parameter_description"><p>a landmark </p></td>
<td class="parameter_annotations"> </td>
</tr></tbody>
</table></div>
</div>
<div class="refsect3">
<a name="id-1.2.3.6.10.6"></a><h4>Returns</h4>
<p> The camera</p>
<p></p>
</div>
</div>
<hr>
<div class="refsect2">
<a name="mia-landmark-set-picfile"></a><h3>mia_landmark_set_picfile ()</h3>
<pre class="programlisting"><span class="returnvalue">void</span>
mia_landmark_set_picfile (<em class="parameter"><code><span class="type">MiaLandmark</span> *self</code></em>,
                          <em class="parameter"><code>const <span class="type">gchar</span> *picfile</code></em>);</pre>
<p>The picture is supposed to show the landmark in its anatomical context. 
The old pictutre file name is replaces and if not then a copy of the 
string is stored.</p>
<div class="refsect3">
<a name="id-1.2.3.6.11.5"></a><h4>Parameters</h4>
<div class="informaltable"><table width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>self</p></td>
<td class="parameter_description"><p>a landmark </p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>picfile</p></td>
<td class="parameter_description"><p>The file name of an image file</p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
</div>
<hr>
<div class="refsect2">
<a name="mia-landmark-get-picfile"></a><h3>mia_landmark_get_picfile ()</h3>
<pre class="programlisting">const <span class="returnvalue">gchar</span> *
mia_landmark_get_picfile (<em class="parameter"><code>const <span class="type">MiaLandmark</span> *self</code></em>);</pre>
<p>The picture is supposed to show the landmark in its anatomical context.</p>
<div class="refsect3">
<a name="id-1.2.3.6.12.5"></a><h4>Parameters</h4>
<div class="informaltable"><table width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody><tr>
<td class="parameter_name"><p>self</p></td>
<td class="parameter_description"><p>a landmark </p></td>
<td class="parameter_annotations"> </td>
</tr></tbody>
</table></div>
</div>
<div class="refsect3">
<a name="id-1.2.3.6.12.6"></a><h4>Returns</h4>
<p> the picture file name, or NULL if it is not set. </p>
<p></p>
</div>
</div>
<hr>
<div class="refsect2">
<a name="mia-landmark-xmlio-write"></a><h3>mia_landmark_xmlio_write ()</h3>
<pre class="programlisting"><span class="returnvalue">gboolean</span>
mia_landmark_xmlio_write (<em class="parameter"><code><span class="type">xmlNodePtr</span> parent</code></em>,
                          <em class="parameter"><code><span class="type">xmlNsPtr</span> ns</code></em>,
                          <em class="parameter"><code>const <span class="type">MiaLandmark</span> *lm</code></em>);</pre>
<p>Stores the landmark as subnode of the given XML parent node.</p>
<div class="refsect3">
<a name="id-1.2.3.6.13.5"></a><h4>Parameters</h4>
<div class="informaltable"><table width="100%" border="0">
<colgroup>
<col width="150px" class="parameters_name">
<col class="parameters_description">
<col width="200px" class="parameters_annotations">
</colgroup>
<tbody>
<tr>
<td class="parameter_name"><p>parent</p></td>
<td class="parameter_description"><p>XML node the landmark description will be attached to </p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>ns</p></td>
<td class="parameter_description"><p>the XML namespace </p></td>
<td class="parameter_annotations"> </td>
</tr>
<tr>
<td class="parameter_name"><p>lm</p></td>
<td class="parameter_description"><p>the landmark to be stored </p></td>
<td class="parameter_annotations"> </td>
</tr>
</tbody>
</table></div>
</div>
<div class="refsect3">
<a name="id-1.2.3.6.13.6"></a><h4>Returns</h4>
<p> TRUE if the XML subtree is sucessfully created and attached to the
parent node, FALSE otherwise. </p>
<p></p>
</div>
</div>
</div>
<div class="refsect1">
<a name="mialm-MiaLandmark.other_details"></a><h2>Types and Values</h2>
</div>
</div>
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