This file is indexed.

/usr/share/gromacs/top/ss.map is in gromacs-data 5.0.2-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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~                  Coil           1           1           1
E               B-Sheet           1           0           0
B              B-Bridge           0           0           0
S                  Bend           0         0.5           0
T                  Turn           1           1           0
H               A-Helix           0           0           1
I               5-Helix         0.5           0         0.5
G               3-Helix         0.5         0.5         0.5
=       Chain_Separator         0.9         0.9         0.9