/usr/share/gromacs/top/charmm27.ff/ffbonded.itp is in gromacs-data 5.0.2-1.
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1222 1223 1224 1225 1226 1227 1228 1229 1230 1231 1232 1233 1234 1235 1236 1237 1238 1239 1240 1241 1242 1243 1244 1245 1246 1247 1248 1249 1250 1251 1252 1253 1254 1255 1256 1257 1258 1259 1260 1261 1262 1263 1264 1265 1266 1267 1268 1269 1270 1271 1272 1273 1274 1275 1276 1277 1278 1279 1280 1281 1282 1283 1284 1285 1286 1287 1288 1289 1290 1291 1292 1293 1294 1295 1296 1297 1298 1299 1300 1301 1302 1303 1304 1305 1306 1307 1308 1309 1310 1311 1312 1313 1314 1315 1316 1317 1318 1319 1320 1321 1322 1323 1324 1325 1326 1327 1328 1329 1330 1331 1332 1333 1334 1335 1336 1337 1338 1339 1340 1341 1342 1343 1344 1345 1346 1347 1348 1349 1350 | [ bondtypes ]
; i j func b0 kb
CST OST 1 0.116 784884.928
SS FE 1 0.232 209200.0
C C 1 0.1335 502080.0
CA CA 1 0.1375 255224.0
CE1 CE1 1 0.134 368192.0
CE1 CE2 1 0.1342 418400.0
CE1 CT2 1 0.1502 305432.0
CE1 CT3 1 0.1504 320494.4
CE2 CE2 1 0.133 426768.0
CP1 C 1 0.149 209200.0
CP1 CC 1 0.149 209200.0
CP1 CD 1 0.149 167360.0
CP2 CP1 1 0.1527 186188.0
CP2 CP2 1 0.1537 186188.0
CP3 CP2 1 0.1537 186188.0
CPB CE1 1 0.138 376560.0
CPB CPA 1 0.14432 250872.64
CPB CPB 1 0.13464 285097.76
CPH1 CPH1 1 0.136 343088.0
CPM CPA 1 0.13716 301248.0
CPT CA 1 0.1368 255224.0
CPT CPT 1 0.14 301248.0
CT1 C 1 0.149 209200.0
CT1 CC 1 0.1522 167360.0
CT1 CD 1 0.1522 167360.0
CT1 CT1 1 0.15 186188.0
CT2 C 1 0.149 209200.0
CT2 CA 1 0.149 192464.0
CT2 CC 1 0.1522 167360.0
CT2 CD 1 0.1522 167360.0
CT2 CPB 1 0.149 192464.0
CT2 CPH1 1 0.15 192154.384
CT2 CT1 1 0.1538 186188.0
CT2 CT2 1 0.153 186188.0
CT3 C 1 0.149 209200.0
CT3 CA 1 0.149 192464.0
CT3 CC 1 0.1522 167360.0
CT3 CD 1 0.1522 167360.0
CT3 CPB 1 0.149 192464.0
CT3 CPH1 1 0.15 192154.384
CT3 CS 1 0.1531 158992.0
CT3 CT1 1 0.1538 186188.0
CT3 CT2 1 0.1528 186188.0
CT3 CT3 1 0.153 186188.0
CY CA 1 0.1365 292880.0
CY CPT 1 0.144 292880.0
CY CT2 1 0.151 192464.0
FE CM 1 0.19 215894.4
FE CPM 1 0.33814 0.0
H CD 1 0.111 276144.0
HA CA 1 0.1083 284512.0
HA CC 1 0.11 265374.384
HA CP2 1 0.1111 258571.2
HA CP3 1 0.1111 258571.2
HA CPM 1 0.109 307607.68
HA CS 1 0.1111 251040.0
HA CT1 1 0.1111 258571.2
HA CT2 1 0.1111 258571.2
HA CT3 1 0.1111 269449.6
HA CY 1 0.108 276144.0
HE1 CE1 1 0.11 301666.4
HE2 CE2 1 0.11 305432.0
HB CP1 1 0.108 276144.0
HB CT1 1 0.108 276144.0
HB CT2 1 0.108 276144.0
HB CT3 1 0.108 276144.0
HP CA 1 0.108 284512.0
HP CY 1 0.108 292880.0
HR1 CPH1 1 0.1083 313800.0
HR1 CPH2 1 0.109 284512.0
HR2 CPH2 1 0.107 278654.4
HR3 CPH1 1 0.1083 305432.0
HT HT 1 0.15139 0.0
N C 1 0.13 217568.0
N CP1 1 0.1434 267776.0
N CP3 1 0.1455 267776.0
NC2 C 1 0.1365 387438.4
NC2 CT2 1 0.149 218404.8
NC2 CT3 1 0.149 218404.8
NC2 HC 1 0.1 380744.0
NH1 C 1 0.1345 309616.0
NH1 CT1 1 0.143 267776.0
NH1 CT2 1 0.143 267776.0
NH1 CT3 1 0.143 267776.0
NH1 H 1 0.0997 368192.0
NH1 HC 1 0.098 338904.0
NH2 CC 1 0.136 359824.0
NH2 CT2 1 0.1455 200832.0
NH2 CT3 1 0.1455 200832.0
NH2 H 1 0.1 401664.0
NH2 HC 1 0.1 384928.0
NH3 CT1 1 0.148 167360.0
NH3 CT2 1 0.148 167360.0
NH3 CT3 1 0.148 167360.0
NH3 HC 1 0.104 337230.4
NP CP1 1 0.1485 267776.0
NP CP3 1 0.1502 267776.0
NP HC 1 0.1006 384928.0
NPH CPA 1 0.13757 315640.96
NPH FE 1 0.1958 226103.36
NR1 CPH1 1 0.138 334720.0
NR1 CPH2 1 0.136 334720.0
NR1 H 1 0.1 389948.8
NR2 CPH1 1 0.138 334720.0
NR2 CPH2 1 0.132 334720.0
NR2 FE 1 0.22 54392.0
NR3 CPH1 1 0.137 317984.0
NR3 CPH2 1 0.132 317984.0
NR3 H 1 0.1 379070.4
NY CA 1 0.137 225936.0
NY CPT 1 0.1375 225936.0
NY H 1 0.0976 389112.0
O C 1 0.123 518816.0
O CC 1 0.123 543920.0
OB CC 1 0.122 627600.0
OB CD 1 0.122 627600.0
OC CA 1 0.126 439320.0
OC CC 1 0.126 439320.0
OC CT2 1 0.133 376560.0
OC CT3 1 0.133 376560.0
OH1 CA 1 0.1411 279742.24
OH1 CD 1 0.14 192464.0
OH1 CT1 1 0.142 358150.4
OH1 CT2 1 0.142 358150.4
OH1 CT3 1 0.142 358150.4
OH1 H 1 0.096 456056.0
OM CM 1 0.1128 933032.0
OM FE 1 0.18 209200.0
OM OM 1 0.123 502080.0
OS CD 1 0.1334 125520.0
OS CT3 1 0.143 284512.0
OT HT 1 0.09572 376560.0
S CT2 1 0.1818 165686.4
S CT3 1 0.1816 200832.0
S HS 1 0.1325 230120.0
SM CT2 1 0.1816 179075.2
SM CT3 1 0.1816 179075.2
SM SM 1 0.2029 144766.4
SS CS 1 0.1836 171544.0
CTL3 CL 1 0.1522 167360.0
CTL2 CL 1 0.1522 167360.0
CTL1 CL 1 0.1522 167360.0
OBL CL 1 0.122 627600.0
OCL CL 1 0.126 439320.0
OSL CL 1 0.1334 125520.0
OHL CL 1 0.14 192464.0
HOL OHL 1 0.096 456056.0
CTL1 HAL1 1 0.1111 258571.2
CTL2 HAL2 1 0.1111 258571.2
CTL3 HAL3 1 0.1111 269449.6
CTL3 OSL 1 0.143 284512.0
CTL2 OSL 1 0.143 284512.0
CTL1 OSL 1 0.143 284512.0
OSL PL 1 0.16 225936.0
O2L PL 1 0.148 485344.0
OHL PL 1 0.159 198321.6
NH3L HCL 1 0.104 343088.0
NH3L CTL2 1 0.151 218404.8
NTL CTL2 1 0.151 179912.0
NTL CTL5 1 0.151 179912.0
CTL5 HL 1 0.108 251040.0
CTL2 HL 1 0.108 251040.0
CTL1 CTL1 1 0.15 186188.0
CTL1 CTL2 1 0.1538 186188.0
CTL1 CTL3 1 0.1538 186188.0
CTL2 CTL2 1 0.153 186188.0
CTL2 CTL3 1 0.1528 186188.0
CTL3 CTL3 1 0.153 186188.0
OHL CTL1 1 0.142 358150.4
OHL CTL2 1 0.142 358150.4
OHL CTL3 1 0.142 358150.4
SL O2L 1 0.1448 451872.0
SL OSL 1 0.1575 209200.0
CEL2 CEL2 1 0.133 426768.0
HEL2 CEL2 1 0.11 305432.0
CEL1 CTL3 1 0.1504 320494.4
CEL1 CEL2 1 0.1342 418400.0
HEL1 CEL1 1 0.11 301666.4
CEL1 CTL2 1 0.1502 305432.0
CEL1 CEL1 1 0.134 368192.0
; ### for NH2 terminal
NH2 CT1 1 0.1455 200832.0
[ constrainttypes ]
#ifdef HEAVY_H
; account for larger inertia with heavy hydrogens
; constraints for the rigid NH3 groups
MNH3 CT1 2 0.191406
MNH3 CT2 2 0.191406
MNH3 CT3 2 0.191406
MNH3 MNH3 2 0.165238
; constraints for rigid ch3
MCH3 CT1 2 0.206892
MCH3 CT2 2 0.206000
MCH3 CT3 2 0.206179
MCH3 MCH3 2 0.187164
MCH3S S 2 0.233335
MCH3S MCH3S 2 0.185689
#else
; no heavy hydrogens.
; constraints for the rigid NH3 groups
MNH3 CT1 2 0.159603
MNH3 CT2 2 0.159603
MNH3 CT3 2 0.159603
MNH3 MNH3 2 0.082619
; constraints for rigid ch3
MCH3 CT1 2 0.168122
MCH3 CT2 2 0.167162
MCH3 CT3 2 0.167354
MCH3 MCH3 2 0.093582
MCH3S S 2 0.195314
MCH3S MCH3S 2 0.092844
#endif
; angle-derived constraints for OH and SH groups in proteins
; The constraint A-C is calculated from the angle A-B-C and bonds A-B, B-C.
CA H 2 0.193641
CD H 2 0.200439
CT1 H 2 0.192081
CT2 H 2 0.192081
CT3 H 2 0.192081
CT2 HS 2 0.234108
CT3 HS 2 0.233942
[ angletypes ]
; i j k func th0 cth ub0 cub
OST CST OST 5 180.0000 25104.0 0.0 0.0
CS SS FE 5 100.6 418.4 0.0 0.0
SS FE NPH 5 90.0 836.8 0.0 0.0
CA CA CA 5 120.00 334.72 0.24162 29288.0
CE1 CE1 CT2 5 123.50 401.664 0.0 0.0
CE1 CE1 CT3 5 123.50 401.664 0.0 0.0
CE1 CT2 CT3 5 112.20 267.776 0.0 0.0
CE2 CE1 CT2 5 126.00 401.664 0.0 0.0
CE2 CE1 CT3 5 125.20 393.296 0.0 0.0
CP1 N C 5 117.0000 502.08 0.0 0.0
CP2 CP1 C 5 112.3000 435.136 0.0 0.0
CP2 CP1 CC 5 112.3000 435.136 0.0 0.0
CP2 CP1 CD 5 112.3000 418.4 0.0 0.0
CP2 CP2 CP1 5 108.5000 585.76 0.0 0.0
CP3 CP2 CP2 5 108.5000 585.76 0.0 0.0
CP3 N C 5 117.0000 502.08 0.0 0.0
CP3 N CP1 5 114.2000 836.8 0.0 0.0
CP3 NP CP1 5 111.0000 836.8 0.0 0.0
CPA CPB CE1 5 126.7400 585.76 0.0 0.0
CPA CPM CPA 5 125.1200 788.2656 0.0 0.0
CPA NPH CPA 5 103.9000 1165.6624 0.0 0.0
CPB CE1 CE2 5 121.5000 585.76 0.0 0.0
CPB CPB CE1 5 126.7500 585.76 0.0 0.0
CPB CPB CPA 5 106.5100 257.7344 0.0 0.0
CPH2 NR1 CPH1 5 107.5000 1087.84 0.0 0.0
CPH2 NR2 CPH1 5 104.0000 1087.84 0.0 0.0
CPH2 NR3 CPH1 5 108.0000 1213.36 0.0 0.0
CPM CPA CPB 5 124.0700 515.4688 0.0 0.0
CPT CA CA 5 118.0000 502.08 0.0 0.0
CPT CPT CA 5 122.0000 502.08 0.0 0.0
CPT CY CA 5 107.40 1004.16 0.2261 20920.0
CPT NY CA 5 108.0000 920.48 0.0 0.0
CT1 CT1 C 5 108.0000 435.136 0.0 0.0
CT1 CT1 CC 5 108.0000 435.136 0.0 0.0
CT1 CT1 CT1 5 111.00 446.4328 0.2561 6694.4
CT1 CT2 CA 5 107.5000 433.4624 0.0 0.0
CT1 CT2 CC 5 108.0000 435.136 0.0 0.0
CT1 CT2 CD 5 108.0000 435.136 0.0 0.0
CT1 CT2 CPH1 5 113.0000 488.2728 0.0 0.0
CT1 CT2 CT1 5 113.50 488.2728 0.2561 9338.688
CT1 NH1 C 5 120.0000 418.4 0.0 0.0
CT2 CA CA 5 122.3000 383.2544 0.0 0.0
CT2 CPB CPA 5 126.7400 543.92 0.0 0.0
CT2 CPB CPB 5 126.7500 543.92 0.0 0.0
CT2 CPH1 CPH1 5 130.0000 383.2544 0.0 0.0
CT2 CT1 C 5 108.0000 435.136 0.0 0.0
CT2 CT1 CC 5 108.0000 435.136 0.0 0.0
CT2 CT1 CD 5 108.0000 435.136 0.0 0.0
CT2 CT1 CT1 5 111.00 446.4328 0.2561 6694.4
CT2 CT2 C 5 108.0000 435.136 0.0 0.0
CT2 CT2 CC 5 108.0000 435.136 0.0 0.0
CT2 CT2 CD 5 108.0000 435.136 0.0 0.0
CT2 CT2 CPB 5 113.0000 585.76 0.0 0.0
CT2 CT2 CT1 5 113.50 488.2728 0.2561 9338.688
CT2 CT2 CT2 5 113.60 488.2728 0.2561 9338.688
CT2 CT3 CT1 5 113.50 488.2728 0.2561 9338.688
CT2 CY CA 5 129.4000 383.2544 0.0 0.0
CT2 CY CPT 5 124.0000 383.2544 0.0 0.0
CT2 NC2 C 5 120.0000 521.3264 0.0 0.0
CT2 NH1 C 5 120.0000 418.4 0.0 0.0
CT2 OS CD 5 109.60 334.72 0.22651 25104.0
CT3 CA CA 5 122.3000 383.2544 0.0 0.0
CT3 CPB CPA 5 126.7400 543.92 0.0 0.0
CT3 CPB CPB 5 126.7500 543.92 0.0 0.0
CT3 CPH1 CPH1 5 130.0000 383.2544 0.0 0.0
CT3 CT1 C 5 108.0000 435.136 0.0 0.0
CT3 CT1 CC 5 108.0000 435.136 0.0 0.0
CT3 CT1 CT1 5 108.50 446.4328 0.2561 6694.4
CT3 CT1 CT2 5 114.00 446.4328 0.2561 6694.4
CT3 CT1 CT3 5 114.00 446.4328 0.2561 6694.4
CT3 CT2 CA 5 107.5000 433.4624 0.0 0.0
CT3 CT2 CPH1 5 113.0000 488.2728 0.0 0.0
CT3 CT2 CT1 5 113.50 488.2728 0.2561 9338.688
CT3 CT2 CT2 5 115.00 485.344 0.2561 6694.4
CT3 CT2 CT3 5 114.00 446.4328 0.2561 6694.4
CT3 NC2 C 5 120.0000 521.3264 0.0 0.0
CT3 NH1 C 5 120.0000 418.4 0.0 0.0
CT3 OS CD 5 109.60 334.72 0.22651 25104.0
CT3 S CT2 5 95.0000 284.512 0.0 0.0
CY CPT CA 5 130.6000 1338.88 0.0 0.0
CY CPT CPT 5 107.4000 920.48 0.0 0.0
CY CT2 CT1 5 114.0000 488.2728 0.0 0.0
CY CT2 CT3 5 114.0000 488.2728 0.0 0.0
FE NPH CPA 5 128.0500 804.5832 0.0 0.0
FE NR2 CPH1 5 133.0000 251.04 0.0 0.0
FE NR2 CPH2 5 123.0000 251.04 0.0 0.0
H NH1 C 5 123.0000 284.512 0.0 0.0
H NH1 CT1 5 117.0000 292.88 0.0 0.0
H NH1 CT2 5 117.0000 292.88 0.0 0.0
H NH1 CT3 5 117.0000 292.88 0.0 0.0
H NH2 CC 5 120.0000 418.4 0.0 0.0
H NH2 H 5 120.0000 192.464 0.0 0.0
H NR1 CPH1 5 125.50 251.04 0.215 16736.0
H NR1 CPH2 5 127.00 251.04 0.214 16736.0
H NR3 CPH1 5 126.00 209.2 0.213 12552.0
H NR3 CPH2 5 126.00 209.2 0.209 12552.0
H NY CA 5 126.0000 234.304 0.0 0.0
H NY CPT 5 126.0000 234.304 0.0 0.0
H OH1 CA 5 108.0000 543.92 0.0 0.0
H OH1 CD 5 115.0000 460.24 0.0 0.0
H OH1 CT1 5 106.0000 481.16 0.0 0.0
H OH1 CT2 5 106.0000 481.16 0.0 0.0
H OH1 CT3 5 106.0000 481.16 0.0 0.0
HA CA CA 5 120.00 242.672 0.21525 20920.0
HA CA CPT 5 122.0000 343.088 0.0 0.0
HA CA CY 5 125.00 267.776 0.2173 20920.0
HA CP2 CP1 5 110.10 279.74224 0.2179 18853.104
HA CP2 CP2 5 110.10 221.752 0.2179 18853.104
HA CP2 CP3 5 110.10 221.752 0.2179 18853.104
HA CP2 HA 5 109.00 297.064 0.1802 4518.72
HA CP3 CP2 5 110.10 221.752 0.2179 18853.104
HA CP3 HA 5 109.00 297.064 0.1802 4518.72
HA CPM CPA 5 117.4400 106.2736 0.0 0.0
HA CPM FE 5 180.0000 0.0 0.0 0.0
HA CS CT3 5 110.10 289.5328 0.2179 18853.104
HA CS HA 5 108.40 297.064 0.1775 11715.2
HA CT1 C 5 109.50 276.144 0.2163 25104.0
HA CT1 CD 5 109.50 276.144 0.2163 25104.0
HA CT1 CT1 5 110.10 288.696 0.2179 18853.104
HA CT1 CT2 5 110.10 288.696 0.2179 18853.104
HA CT1 CT3 5 110.10 288.696 0.2179 18853.104
HA CT1 HA 5 109.00 297.064 0.1802 4518.72
HA CT2 C 5 109.50 276.144 0.2163 25104.0
HA CT2 CA 5 107.5000 412.5424 0.0 0.0
HA CT2 CC 5 109.50 276.144 0.2163 25104.0
HA CT2 CD 5 109.50 276.144 0.2163 25104.0
HA CT2 CE1 5 111.50 376.56 0.0 0.0
HA CT2 CPB 5 109.5000 418.4 0.0 0.0
HA CT2 CPH1 5 109.5000 279.74224 0.0 0.0
HA CT2 CT1 5 110.10 279.74224 0.2179 18853.104
HA CT2 CT2 5 110.10 221.752 0.2179 18853.104
HA CT2 CT3 5 110.10 289.5328 0.2179 18853.104
HA CT2 CY 5 109.5000 279.74224 0.0 0.0
HA CT2 HA 5 109.00 297.064 0.1802 4518.72
HA CT3 C 5 109.50 276.144 0.2163 25104.0
HA CT3 CA 5 107.5000 412.5424 0.0 0.0
HA CT3 CC 5 109.50 276.144 0.2163 25104.0
HA CT3 CD 5 109.50 276.144 0.2163 25104.0
HA CT3 CE1 5 111.50 351.456 0.0 0.0
HA CT3 CPB 5 109.5000 418.4 0.0 0.0
HA CT3 CPH1 5 109.5000 279.74224 0.0 0.0
HA CT3 CS 5 110.10 289.5328 0.2179 18853.104
HA CT3 CT1 5 110.10 279.74224 0.2179 18853.104
HA CT3 CT2 5 110.10 289.5328 0.2179 18853.104
HA CT3 CT3 5 110.10 313.8 0.2179 18853.104
HA CT3 HA 5 108.40 297.064 0.1802 4518.72
HA CY CA 5 126.40 167.36 0.2186 20920.0
HA CY CPT 5 126.40 267.776 0.2255 20920.0
HE1 CE1 CE1 5 119.50 435.136 0.0 0.0
HE1 CE1 CE2 5 118.00 351.456 0.0 0.0
HE1 CE1 CT2 5 116.00 334.72 0.0 0.0
HE1 CE1 CT3 5 117.00 184.096 0.0 0.0
HE1 CE1 CPB 5 120.0000 418.4 0.0 0.0
HE2 CE2 CE1 5 120.50 376.56 0.0 0.0
HE2 CE2 CE2 5 120.50 464.424 0.0 0.0
HE2 CE2 HE2 5 119.00 158.992 0.0 0.0
HB CP1 C 5 112.0000 418.4 0.0 0.0
HB CP1 CC 5 112.0000 418.4 0.0 0.0
HB CP1 CD 5 112.0000 418.4 0.0 0.0
HB CP1 CP2 5 118.0000 292.88 0.0 0.0
HB CT1 C 5 109.5000 418.4 0.0 0.0
HB CT1 CC 5 109.5000 418.4 0.0 0.0
HB CT1 CD 5 109.5000 418.4 0.0 0.0
HB CT1 CT1 5 111.0000 292.88 0.0 0.0
HB CT1 CT2 5 111.0000 292.88 0.0 0.0
HB CT1 CT3 5 111.0000 292.88 0.0 0.0
HB CT2 C 5 109.5000 418.4 0.0 0.0
HB CT2 CC 5 109.5000 418.4 0.0 0.0
HB CT2 CD 5 109.5000 418.4 0.0 0.0
HB CT2 HB 5 115.0000 301.248 0.0 0.0
HB CT3 C 5 109.5000 418.4 0.0 0.0
HC NC2 C 5 120.0000 410.032 0.0 0.0
HC NC2 CT2 5 120.0000 338.0672 0.0 0.0
HC NC2 CT3 5 120.0000 338.0672 0.0 0.0
HC NC2 HC 5 120.0000 209.2 0.0 0.0
HC NH2 CT2 5 111.0000 418.4 0.0 0.0
HC NH2 CT3 5 111.0000 418.4 0.0 0.0
HC NH2 HC 5 106.5000 326.352 0.0 0.0
HC NH3 CT1 5 109.50 251.04 0.2074 16736.0
HC NH3 CT2 5 109.50 251.04 0.2074 16736.0
HC NH3 CT3 5 109.50 251.04 0.2074 16736.0
HC NH3 HC 5 109.5000 368.192 0.0 0.0
HC NP CP1 5 109.50 276.144 0.2056 3347.2
HC NP CP3 5 109.50 276.144 0.2056 3347.2
HC NP HC 5 107.5000 426.768 0.0 0.0
HP CA CA 5 120.00 251.04 0.21525 18409.6
HP CA CPT 5 122.00 251.04 0.2146 18409.6
HP CA CY 5 125.00 267.776 0.2173 20920.0
HP CY CA 5 126.40 267.776 0.2186 20920.0
HP CY CPT 5 126.40 267.776 0.2255 20920.0
HR1 CPH1 CPH1 5 130.00 184.096 0.2215 12552.0
HR3 CPH1 CPH1 5 130.00 209.2 0.22 16736.0
HS S CT2 5 95.0000 324.6784 0.0 0.0
HS S CT3 5 95.0000 359.824 0.0 0.0
HT OT HT 5 104.5200 460.24 0.0 0.0
N C CP1 5 112.5000 167.36 0.0 0.0
N C CT1 5 112.5000 167.36 0.0 0.0
N C CT2 5 112.5000 167.36 0.0 0.0
N C CT3 5 112.5000 167.36 0.0 0.0
N CP1 C 5 108.2000 418.4 0.0 0.0
N CP1 CC 5 108.2000 418.4 0.0 0.0
N CP1 CD 5 108.2000 418.4 0.0 0.0
N CP1 CP2 5 110.8000 585.76 0.0 0.0
N CP1 HB 5 112.0000 401.664 0.0 0.0
N CP3 CP2 5 110.5000 585.76 0.0 0.0
N CP3 HA 5 108.0000 401.664 0.0 0.0
NC2 C NC2 5 120.00 435.136 0.23642 75312.0
NC2 CT2 CT2 5 107.5000 566.5136 0.0 0.0
NC2 CT2 HA 5 107.5000 430.952 0.0 0.0
NC2 CT3 HA 5 107.5000 430.952 0.0 0.0
NH1 C CP1 5 116.5000 669.44 0.0 0.0
NH1 C CT1 5 116.5000 669.44 0.0 0.0
NH1 C CT2 5 116.5000 669.44 0.0 0.0
NH1 C CT3 5 116.5000 669.44 0.0 0.0
NH1 CT1 C 5 107.0000 418.4 0.0 0.0
NH1 CT1 CC 5 107.0000 418.4 0.0 0.0
NH1 CT1 CD 5 107.0000 418.4 0.0 0.0
NH1 CT1 CT1 5 113.5000 585.76 0.0 0.0
NH1 CT1 CT2 5 113.5000 585.76 0.0 0.0
NH1 CT1 CT3 5 113.5000 585.76 0.0 0.0
NH1 CT1 HB 5 108.0000 401.664 0.0 0.0
NH1 CT2 C 5 107.0000 418.4 0.0 0.0
NH1 CT2 CC 5 107.0000 418.4 0.0 0.0
NH1 CT2 CD 5 107.0000 418.4 0.0 0.0
NH1 CT2 CT2 5 113.5000 585.76 0.0 0.0
NH1 CT2 HA 5 109.5000 430.952 0.0 0.0
NH1 CT2 HB 5 108.0000 401.664 0.0 0.0
NH1 CT3 HA 5 109.5000 430.952 0.0 0.0
NH2 CC CP1 5 112.5000 669.44 0.0 0.0
NH2 CC CT1 5 116.50 418.4 0.245 41840.0
NH2 CC CT2 5 116.50 418.4 0.245 41840.0
NH2 CC CT3 5 116.50 418.4 0.245 41840.0
NH2 CC HA 5 111.00 368.192 0.198 41840.0
NH2 CT2 HA 5 109.50 317.984 0.214 41840.0
NH2 CT2 HB 5 109.50 317.984 0.214 41840.0
NH2 CT2 CD 5 108.0000 435.136 0.0 0.0
NH2 CT2 CT2 5 110.0000 566.5136 0.0 0.0
NH2 CT3 HA 5 109.50 317.984 0.214 41840.0
NH3 CT1 C 5 110.0000 365.6816 0.0 0.0
NH3 CT1 CC 5 110.0000 365.6816 0.0 0.0
NH3 CT1 CT1 5 110.0000 566.5136 0.0 0.0
NH3 CT1 CT2 5 110.0000 566.5136 0.0 0.0
NH3 CT1 CT3 5 110.0000 566.5136 0.0 0.0
NH3 CT1 HB 5 107.5000 430.952 0.0 0.0
NH3 CT2 C 5 110.0000 365.6816 0.0 0.0
NH3 CT2 CC 5 110.0000 365.6816 0.0 0.0
NH3 CT2 CD 5 110.0000 365.6816 0.0 0.0
NH3 CT2 CT2 5 110.0000 566.5136 0.0 0.0
NH3 CT2 HA 5 107.50 376.56 0.2101 29288.0
NH3 CT2 HB 5 107.5000 430.952 0.0 0.0
NH3 CT3 HA 5 107.50 376.56 0.2101 29288.0
NP CP1 C 5 106.0000 418.4 0.0 0.0
NP CP1 CC 5 106.0000 418.4 0.0 0.0
NP CP1 CD 5 106.0000 418.4 0.0 0.0
NP CP1 CP2 5 108.5000 585.76 0.0 0.0
NP CP1 HB 5 107.5000 430.952 0.0 0.0
NP CP3 CP2 5 108.5000 585.76 0.0 0.0
NP CP3 HA 5 109.1500 430.952 0.0 0.0
NPH CPA CPB 5 111.5400 1020.896 0.0 0.0
NPH CPA CPM 5 124.3900 736.384 0.0 0.0
NPH FE CM 5 90.0000 418.4 0.0 0.0
NPH FE CPM 5 45.0000 0.0 0.0 0.0
NPH FE NPH 5 90.0000 120.41552 0.0 0.0
NR1 CPH1 CPH1 5 106.0000 1087.84 0.0 0.0
NR1 CPH1 CT2 5 124.0000 383.2544 0.0 0.0
NR1 CPH1 CT3 5 124.0000 383.2544 0.0 0.0
NR1 CPH1 HR3 5 124.00 209.2 0.214 16736.0
NR1 CPH2 HR1 5 122.50 209.2 0.214 16736.0
NR2 CPH1 CPH1 5 110.0000 1087.84 0.0 0.0
NR2 CPH1 CT2 5 120.0000 383.2544 0.0 0.0
NR2 CPH1 HR3 5 120.00 209.2 0.214 16736.0
NR2 CPH2 HR1 5 125.00 209.2 0.212 16736.0
NR2 CPH2 NR1 5 112.5000 1087.84 0.0 0.0
NR2 FE CM 5 180.0000 418.4 0.0 0.0
NR2 FE NPH 5 90.0000 418.4 0.0 0.0
NR3 CPH1 CPH1 5 108.0000 1213.36 0.0 0.0
NR3 CPH1 CT2 5 122.0000 383.2544 0.0 0.0
NR3 CPH1 HR1 5 122.00 184.096 0.218 12552.0
NR3 CPH2 HR2 5 126.00 267.776 0.214 20920.0
NR3 CPH2 NR3 5 108.0000 1213.36 0.0 0.0
NY CA CY 5 110.00 1004.16 0.224 20920.0
NY CA HA 5 125.00 267.776 0.2177 20920.0
NY CA HP 5 125.00 267.776 0.2177 20920.0
NY CPT CA 5 130.6000 1338.88 0.0 0.0
NY CPT CPT 5 107.4000 920.48 0.0 0.0
O C CP1 5 118.0000 669.44 0.0 0.0
O C CT1 5 121.0000 669.44 0.0 0.0
O C CT2 5 121.0000 669.44 0.0 0.0
O C CT3 5 121.0000 669.44 0.0 0.0
O C H 5 121.7000 418.4 0.0 0.0
O C N 5 122.5000 669.44 0.0 0.0
O C NH1 5 122.5000 669.44 0.0 0.0
O CC CP1 5 118.0000 669.44 0.0 0.0
O CC CT1 5 121.00 125.52 0.244 41840.0
O CC CT2 5 121.00 125.52 0.244 41840.0
O CC CT3 5 121.00 125.52 0.244 41840.0
O CC HA 5 122.0000 368.192 0.0 0.0
O CC NH2 5 122.50 627.6 0.237 41840.0
OB CD CP1 5 125.00 585.76 0.2442 16736.0
OB CD CT1 5 125.00 585.76 0.2442 16736.0
OB CD CT2 5 125.00 585.76 0.2442 16736.0
OB CD CT3 5 125.00 585.76 0.2442 16736.0
OC CA CA 5 120.0000 334.72 0.0 0.0
OC CC CP1 5 118.00 334.72 0.2388 41840.0
OC CC CT1 5 118.00 334.72 0.2388 41840.0
OC CC CT2 5 118.00 334.72 0.2388 41840.0
OC CC CT3 5 118.00 334.72 0.2388 41840.0
OC CC OC 5 124.00 836.8 0.2225 58576.0
OC CT2 CT3 5 122.0000 543.92 0.0 0.0
OC CT2 HA 5 118.3000 543.92 0.0 0.0
OC CT3 HA 5 118.3000 543.92 0.0 0.0
OH1 CA CA 5 120.0000 378.2336 0.0 0.0
OH1 CD CT2 5 110.5000 460.24 0.0 0.0
OH1 CD CT3 5 110.5000 460.24 0.0 0.0
OH1 CD OB 5 123.00 418.4 0.2262 175728.0
OH1 CT1 CT1 5 110.1000 633.4576 0.0 0.0
OH1 CT1 CT3 5 110.1000 633.4576 0.0 0.0
OH1 CT1 HA 5 108.8900 384.0912 0.0 0.0
OH1 CT2 CT1 5 110.1000 633.4576 0.0 0.0
OH1 CT2 CT2 5 110.1000 633.4576 0.0 0.0
OH1 CT2 CT3 5 110.1000 633.4576 0.0 0.0
OH1 CT2 HA 5 108.8900 384.0912 0.0 0.0
OH1 CT3 HA 5 108.8900 384.0912 0.0 0.0
OM CM FE 5 180.0000 292.88 0.0 0.0
OM FE NPH 5 90.0000 41.84 0.0 0.0
; ### For Heme : the O2 group is NOT at 180.00
;OM OM FE 5 180.0000 0.0 0.0 0.0
; The force constant is quite arbitrary.
OM OM FE 5 122.0000 418.4 0.0 0.0
; ###
OS CD CP1 5 109.00 460.24 0.2326 16736.0
OS CD CT1 5 109.00 460.24 0.2326 16736.0
OS CD CT2 5 109.00 460.24 0.2326 16736.0
OS CD CT3 5 109.00 460.24 0.2326 16736.0
OS CD OB 5 125.90 753.12 0.22576 133888.0
OS CT2 HA 5 109.5000 502.08 0.0 0.0
OS CT3 HA 5 109.5000 502.08 0.0 0.0
S CT2 CT1 5 112.5000 485.344 0.0 0.0
S CT2 CT2 5 114.5000 485.344 0.0 0.0
S CT2 CT3 5 114.5000 485.344 0.0 0.0
S CT2 HA 5 111.3000 385.7648 0.0 0.0
S CT3 HA 5 111.3000 385.7648 0.0 0.0
SM CT2 CT1 5 112.5000 485.344 0.0 0.0
SM CT2 HA 5 111.0000 317.984 0.0 0.0
SM CT3 HA 5 111.0000 317.984 0.0 0.0
SM SM CT2 5 103.3000 606.68 0.0 0.0
SM SM CT3 5 103.3000 606.68 0.0 0.0
SS CS CT3 5 118.0000 460.24 0.0 0.0
SS CS HA 5 112.3000 334.72 0.0 0.0
OBL CL CTL3 5 125.0 585.76 0.2442 16736.0
OBL CL CTL2 5 125.0 585.76 0.2442 16736.0
OBL CL CTL1 5 125.0 585.76 0.2442 16736.0
OSL CL OBL 5 125.9 753.12 0.22576 133888.0
CL OSL CTL1 5 109.6 334.72 0.22651 25104.0
CL OSL CTL2 5 109.6 334.72 0.22651 25104.0
CL OSL CTL3 5 109.6 334.72 0.22651 25104.0
HAL2 CTL2 CL 5 109.50 276.144 0.2163 25104.0
HAL3 CTL3 CL 5 109.50 276.144 0.2163 25104.0
CTL2 CTL2 CL 5 108.00 435.136 0.0 0.0
CTL3 CTL2 CL 5 108.00 435.136 0.0 0.0
OSL CL CTL3 5 109.0 460.24 0.2326 16736.0
OSL CL CTL2 5 109.0 460.24 0.2326 16736.0
OHL CL OBL 5 123.0 418.4 0.2262 175728.0
OCL CL CTL2 5 118.0 334.72 0.2388 41840.0
OCL CL CTL3 5 118.0 334.72 0.2388 41840.0
OCL CL OCL 5 124.0 836.8 0.2225 58576.0
OHL CL CTL3 5 110.50 460.24 0.0 0.0
OHL CL CTL2 5 110.50 460.24 0.0 0.0
HOL OHL CL 5 115.0 460.24 0.0 0.0
OSL CTL1 CTL2 5 110.10 633.4576 0.0 0.0
OSL CTL1 CTL3 5 110.10 633.4576 0.0 0.0
OSL CTL2 CTL1 5 110.10 633.4576 0.0 0.0
OSL CTL2 CTL2 5 110.10 633.4576 0.0 0.0
OSL CTL2 CTL3 5 110.10 633.4576 0.0 0.0
HAL2 CTL2 HAL2 5 109.00 297.064 0.1802 4518.72
HAL3 CTL3 HAL3 5 108.40 297.064 0.1802 4518.72
HAL1 CTL1 OSL 5 109.5 502.08 0.0 0.0
HAL2 CTL2 OSL 5 109.5 502.08 0.0 0.0
HAL3 CTL3 OSL 5 109.5 502.08 0.0 0.0
CTL2 OSL PL 5 120.0 167.36 0.233 29288.0
CTL3 OSL PL 5 120.0 167.36 0.233 29288.0
HOL OHL PL 5 115.0 251.04 0.23 33472.0
OSL PL OSL 5 104.3 669.44 0.0 0.0
OSL PL O2L 5 111.6 827.5952 0.0 0.0
OSL PL OHL 5 108.0 402.5008 0.0 0.0
O2L PL O2L 5 120.0 1004.16 0.0 0.0
O2L PL OHL 5 108.23 827.5952 0.0 0.0
NTL CTL2 HL 5 109.5 334.72 0.213 22593.6
NTL CTL5 HL 5 109.5 334.72 0.213 22593.6
HL CTL2 HL 5 109.50 200.832 0.1767 23430.4
HL CTL5 HL 5 109.50 200.832 0.1767 23430.4
CTL2 NTL CTL2 5 109.5 502.08 0.2466 21756.8
CTL5 NTL CTL2 5 109.5 502.08 0.2466 21756.8
CTL5 NTL CTL5 5 109.5 502.08 0.2466 21756.8
HL CTL2 CTL2 5 110.10 279.74224 0.2179 18853.104
HL CTL2 CTL3 5 110.10 279.74224 0.2179 18853.104
HAL1 CTL1 CTL1 5 110.10 288.696 0.2179 18853.104
HAL1 CTL1 CTL2 5 110.10 288.696 0.2179 18853.104
HAL1 CTL1 CTL3 5 110.10 288.696 0.2179 18853.104
HAL2 CTL2 CTL1 5 110.10 221.752 0.2179 18853.104
HAL2 CTL2 CTL2 5 110.10 221.752 0.2179 18853.104
HAL2 CTL2 CTL3 5 110.10 289.5328 0.2179 18853.104
HAL3 CTL3 CTL1 5 110.10 279.74224 0.2179 18853.104
HAL3 CTL3 CTL2 5 110.10 289.5328 0.2179 18853.104
HAL3 CTL3 CTL3 5 110.10 313.8 0.2179 18853.104
NTL CTL2 CTL2 5 115.00 566.5136 0.0 0.0
NTL CTL2 CTL3 5 115.00 566.5136 0.0 0.0
HCL NH3L CTL2 5 109.50 276.144 0.2056 3347.2
HCL NH3L HCL 5 109.50 343.088 0.0 0.0
NH3L CTL2 CTL2 5 110.00 566.5136 0.0 0.0
NH3L CTL2 HAL2 5 107.50 376.56 0.20836 29288.0
CTL1 CTL1 CTL1 5 111.00 446.4328 0.2561 6694.4
CTL1 CTL1 CTL2 5 113.50 488.2728 0.2561 9338.688
CTL1 CTL1 CTL3 5 108.50 446.4328 0.2561 6694.4
CTL1 CTL2 CTL1 5 113.50 488.2728 0.2561 9338.688
CTL1 CTL2 CTL2 5 113.50 488.2728 0.2561 9338.688
CTL1 CTL2 CTL3 5 113.50 488.2728 0.2561 9338.688
CTL2 CTL1 CTL2 5 113.50 488.2728 0.2561 9338.688
CTL2 CTL1 CTL3 5 113.50 488.2728 0.2561 9338.688
CTL2 CTL2 CTL2 5 113.60 488.2728 0.2561 9338.688
CTL2 CTL2 CTL3 5 115.00 485.344 0.2561 6694.4
HOL OHL CTL1 5 106.00 481.16 0.0 0.0
HOL OHL CTL2 5 106.00 481.16 0.0 0.0
HOL OHL CTL3 5 106.00 481.16 0.0 0.0
OHL CTL1 CTL2 5 110.10 633.4576 0.0 0.0
OHL CTL2 CTL1 5 110.10 633.4576 0.0 0.0
OHL CTL2 CTL2 5 110.10 633.4576 0.0 0.0
OHL CTL2 CTL3 5 110.10 633.4576 0.0 0.0
OHL CTL1 HAL1 5 108.89 384.0912 0.0 0.0
OHL CTL2 HAL2 5 108.89 384.0912 0.0 0.0
OHL CTL3 HAL3 5 108.89 384.0912 0.0 0.0
O2L SL O2L 5 109.47 1087.84 0.245 29288.0
O2L SL OSL 5 98.0 711.28 0.0 0.0
CTL2 OSL SL 5 109.0 125.52 0.19 22593.6
CTL3 OSL SL 5 109.0 125.52 0.19 22593.6
CEL1 CEL1 CTL2 5 123.50 401.664 0.0 0.0
CEL1 CEL1 CTL3 5 123.50 401.664 0.0 0.0
CEL2 CEL1 CTL2 5 126.00 401.664 0.0 0.0
CEL2 CEL1 CTL3 5 125.20 393.296 0.0 0.0
HEL1 CEL1 CEL1 5 119.50 435.136 0.0 0.0
HEL1 CEL1 CEL2 5 118.00 351.456 0.0 0.0
HEL1 CEL1 CTL2 5 116.00 334.72 0.0 0.0
HEL1 CEL1 CTL3 5 117.00 184.096 0.0 0.0
HEL2 CEL2 CEL1 5 120.50 376.56 0.0 0.0
HEL2 CEL2 CEL2 5 120.50 464.424 0.0 0.0
HEL2 CEL2 HEL2 5 119.00 158.992 0.0 0.0
CEL1 CTL2 CTL2 5 112.20 267.776 0.0 0.0
CEL1 CTL2 CTL3 5 112.20 267.776 0.0 0.0
HAL2 CTL2 CEL1 5 111.50 376.56 0.0 0.0
HAL3 CTL3 CEL1 5 111.50 351.456 0.0 0.0
CEL1 CTL2 CEL1 5 114.0 251.04 0.0 0.0
; ### for NH2 terminal
H NH2 CT1 5 111.0000 418.4 0.0 0.0
NH2 CT1 C 5 107.0000 418.4 0.0 0.0
NH2 CT1 CT1 5 110.0000 566.5136 0.0 0.0
NH2 CT1 CT2 5 110.0000 566.5136 0.0 0.0
NH2 CT1 CT3 5 110.0000 566.5136 0.0 0.0
NH2 CT1 HB 5 109.50 317.984 0.214 41840.0
OH1 CD CT1 5 110.5000 460.24 0.0 0.0
; ### for GLY-NH2 terminal
H NH2 CT2 5 111.0000 418.4 0.0 0.0 ; from HC-NH2-CT2
NH2 CT2 C 5 107.0000 418.4 0.0 0.0 ; from NH2-CT1-C
; ###
; ### for COOH terminal
OH1 CD CP1 5 110.5000 460.24 0.0 0.0
CT3 CT1 CD 5 108.0000 435.136 0.0 0.0
CT1 CT1 CD 5 108.0000 435.136 0.0 0.0
; ### For Heme with His and O2 ligands:
OM FE NR2 5 180.0000 0.0 0.0 0.0
; ###
[ dihedraltypes ]
; i j k l func phi0 cp mult
C CT1 NH1 C 9 180.00 0.8368 1
C CT2 NH1 C 9 180.00 0.8368 1
C N CP1 C 9 0.00 3.3472 3
CA CA CA CA 9 180.00 12.9704 2
CA CPT CPT CA 9 180.00 12.9704 2
CA CT2 CT1 C 9 0.00 0.16736 3
CA CY CPT CA 9 180.00 12.552 2
CA NY CPT CA 9 180.00 12.552 2
CC CP1 N C 9 0.00 3.3472 3
CC CT1 CT2 CA 9 0.00 0.16736 3
CC CT1 NH1 C 9 180.00 0.8368 1
CC CT2 NH1 C 9 180.00 0.8368 1
CD CP1 N C 9 180.00 0.0 1
CD CT1 NH1 C 9 180.00 0.8368 1
CD CT2 NH1 C 9 180.00 0.8368 1
CE1 CE1 CT3 HA 9 0.00 0.12552 3
CE2 CE1 CT2 CT3 9 180.00 2.092 1
CE2 CE1 CT2 CT3 9 180.00 5.4392 3
CE2 CE1 CT2 HA 9 0.00 0.50208 3
CE2 CE1 CT3 HA 9 180.00 0.2092 3
CP1 C N CP1 9 180.00 11.506 2
CP1 C N CP1 9 0.00 1.2552 4
CP2 CP1 N C 9 0.00 3.3472 3
CP2 CP3 N C 9 180.00 0.0 3
CP2 CP3 N CP1 9 0.00 0.4184 3
CP2 CP3 NP CP1 9 0.00 0.33472 3
CP3 N C CP1 9 180.00 11.506 2
CP3 N C CP1 9 0.00 1.2552 4
CP3 N CP1 C 9 0.00 0.4184 3
CP3 N CP1 CC 9 0.00 0.4184 3
CP3 N CP1 CP2 9 0.00 0.4184 3
CP3 NP CP1 C 9 0.00 0.33472 3
CP3 NP CP1 CC 9 0.00 0.33472 3
CP3 NP CP1 CD 9 0.00 0.33472 3
CP3 NP CP1 CP2 9 0.00 0.33472 3
CPH2 NR1 CPH1 CPH1 9 180.00 58.576 2
CPH2 NR2 CPH1 CPH1 9 180.00 58.576 2
CPH2 NR3 CPH1 CPH1 9 180.00 50.208 2
CPT CA CA CA 9 180.00 12.9704 2
CPT CPT CA CA 9 180.00 12.9704 2
CPT CPT CY CA 9 180.00 16.736 2
CPT CPT NY CA 9 180.00 20.92 2
CT1 C N CP1 9 180.00 11.506 2
CT1 C N CP1 9 0.00 1.2552 4
CT1 C N CP3 9 180.00 11.506 2
CT1 C N CP3 9 0.00 1.2552 4
CT1 C NH1 CT1 9 0.00 6.6944 1
CT1 C NH1 CT1 9 180.00 10.46 2
CT1 CT1 NH1 C 9 0.00 7.5312 1
CT1 CT2 CA CA 9 180.00 0.96232 2
CT1 CT2 CPH1 CPH1 9 0.00 0.8368 1
CT1 CT2 CPH1 CPH1 9 0.00 1.12968 2
CT1 CT2 CPH1 CPH1 9 0.00 0.0 3
CT1 CT2 CY CA 9 180.00 0.96232 2
CT1 CT2 CY CPT 9 180.00 0.96232 2
CT1 NH1 C CP1 9 0.00 6.6944 1
CT1 NH1 C CP1 9 180.00 10.46 2
CT2 C N CP1 9 180.00 11.506 2
CT2 C N CP1 9 0.00 1.2552 4
CT2 C N CP3 9 180.00 11.506 2
CT2 C N CP3 9 0.00 1.2552 4
CT2 C NH1 CT1 9 0.00 6.6944 1
CT2 C NH1 CT1 9 180.00 10.46 2
CT2 C NH1 CT2 9 0.00 6.6944 1
CT2 C NH1 CT2 9 180.00 10.46 2
CT2 C NH1 CT3 9 0.00 6.6944 1
CT2 C NH1 CT3 9 180.00 10.46 2
CT2 CA CA CA 9 180.00 12.9704 2
CT2 CPH1 NR1 CPH2 9 180.00 12.552 2
CT2 CPH1 NR2 CPH2 9 180.00 12.552 2
CT2 CPH1 NR3 CPH2 9 180.00 10.46 2
CT2 CT1 NH1 C 9 0.00 7.5312 1
CT2 CT2 CPH1 CPH1 9 0.00 1.6736 1
CT2 CT2 CT2 CT2 9 0.00 0.6276 1
CT2 CT2 NH1 C 9 0.00 7.5312 1
CT2 CY CPT CA 9 180.00 12.552 2
CT2 CY CPT CPT 9 180.00 12.552 2
CT2 NH1 C CP1 9 0.00 6.6944 1
CT2 NH1 C CP1 9 180.00 10.46 2
CT2 NH1 C CT1 9 0.00 6.6944 1
CT2 NH1 C CT1 9 180.00 10.46 2
CT2 SM SM CT2 9 0.00 4.184 1
CT2 SM SM CT2 9 0.00 17.1544 2
CT2 SM SM CT2 9 0.00 3.7656 3
CT3 C N CP1 9 180.00 11.506 2
CT3 C N CP1 9 0.00 1.2552 4
CT3 C N CP3 9 180.00 11.506 2
CT3 C N CP3 9 0.00 1.2552 4
CT3 C NH1 CT1 9 0.00 6.6944 1
CT3 C NH1 CT1 9 180.00 10.46 2
CT3 C NH1 CT2 9 0.00 6.6944 1
CT3 C NH1 CT2 9 180.00 10.46 2
CT3 C NH1 CT3 9 0.00 6.6944 1
CT3 C NH1 CT3 9 180.00 10.46 2
CT3 CA CA CA 9 180.00 12.9704 2
CT3 CE1 CE2 HE2 9 180.00 21.7568 2
CT3 CPH1 NR1 CPH2 9 180.00 12.552 2
CT3 CT1 NH1 C 9 0.00 7.5312 1
CT3 CT2 CA CA 9 180.00 0.96232 2
CT3 CT2 CPH1 CPH1 9 0.00 0.8368 1
CT3 CT2 CPH1 CPH1 9 0.00 1.12968 2
CT3 CT2 CPH1 CPH1 9 0.00 0.0 3
CT3 CT2 CT2 CT2 9 0.00 0.6276 1
CT3 CT2 CT2 CT3 9 0.00 0.6276 1
CT3 CT2 CY CA 9 180.00 0.96232 2
CT3 CT2 CY CPT 9 180.00 0.96232 2
CT3 CT2 S CT3 9 180.00 1.00416 1
CT3 CT2 S CT3 9 0.00 1.54808 3
CT3 NH1 C CP1 9 0.00 6.6944 1
CT3 NH1 C CP1 9 180.00 10.46 2
CT3 NH1 C CT1 9 0.00 6.6944 1
CT3 NH1 C CT1 9 180.00 10.46 2
CT3 S CT2 CT2 9 180.00 1.00416 1
CT3 S CT2 CT2 9 0.00 1.54808 3
CT3 SM SM CT3 9 0.00 4.184 1
CT3 SM SM CT3 9 0.00 17.1544 2
CT3 SM SM CT3 9 0.00 3.7656 3
CY CA NY CPT 9 180.00 20.92 2
CY CPT CA CA 9 180.00 12.552 2
CY CPT CPT CA 9 180.00 41.84 2
H NH1 C CP1 9 180.00 10.46 2
H NH1 C CT1 9 180.00 10.46 2
H NH1 C CT2 9 180.00 10.46 2
H NH1 C CT3 9 180.00 10.46 2
H NH1 CT1 C 9 0.00 0.0 1
H NH1 CT1 CC 9 0.00 0.0 1
H NH1 CT1 CD 9 0.00 0.0 1
H NH1 CT1 CT1 9 0.00 0.0 1
H NH1 CT1 CT2 9 0.00 0.0 1
H NH1 CT1 CT3 9 0.00 0.0 1
H NH1 CT2 C 9 0.00 0.0 1
H NH1 CT2 CC 9 0.00 0.0 1
H NH1 CT2 CD 9 0.00 0.0 1
H NH1 CT2 CT2 9 0.00 0.0 1
H NH1 CT2 CT3 9 0.00 0.0 1
H NH2 CC CT1 9 180.00 5.8576 2
H NH2 CC CT2 9 180.00 5.8576 2
H NH2 CC CT3 9 180.00 5.8576 2
H NH2 CC CP1 9 180.00 10.46 2
H NR1 CPH1 CPH1 9 180.00 4.184 2
H NR1 CPH1 CT2 9 180.00 4.184 2
H NR1 CPH1 CT3 9 180.00 4.184 2
H NR3 CPH1 CPH1 9 180.00 5.8576 2
H NR3 CPH1 CT2 9 180.00 12.552 2
H NR3 CPH1 CT3 9 180.00 12.552 2
H NY CA CY 9 180.00 3.3472 2
H NY CPT CA 9 180.00 3.3472 2
H NY CPT CPT 9 180.00 3.3472 2
H OH1 CA CA 9 180.00 4.14216 2
H OH1 CT1 CT1 9 0.00 5.56472 1
H OH1 CT1 CT1 9 0.00 0.75312 2
H OH1 CT1 CT1 9 0.00 1.33888 3
H OH1 CT1 CT3 9 0.00 5.56472 1
H OH1 CT1 CT3 9 0.00 0.75312 2
H OH1 CT1 CT3 9 0.00 1.33888 3
H OH1 CT2 CT1 9 0.00 5.4392 1
H OH1 CT2 CT1 9 0.00 1.2552 2
H OH1 CT2 CT1 9 0.00 1.75728 3
H OH1 CT2 CT2 9 0.00 5.4392 1
H OH1 CT2 CT2 9 0.00 1.2552 2
H OH1 CT2 CT2 9 0.00 1.75728 3
H OH1 CT2 CT3 9 0.00 5.4392 1
H OH1 CT2 CT3 9 0.00 1.2552 2
H OH1 CT2 CT3 9 0.00 1.75728 3
HA CA CA CA 9 180.00 14.644 2
HA CA CA CPT 9 180.00 14.644 2
HA CA CA HA 9 180.00 10.46 2
HA CA CPT CPT 9 180.00 12.552 2
HA CA CPT CY 9 180.00 16.736 2
HA CA CY CPT 9 180.00 5.0208 2
HA CA CY CT2 9 180.00 5.0208 2
HA CA NY CPT 9 180.00 12.552 2
HA CA NY H 9 180.00 4.184 2
HA CC NH2 H 9 180.00 5.8576 2
HA CP3 N C 9 180.00 0.0 3
HA CP3 N CP1 9 0.00 0.4184 3
HA CP3 NP CP1 9 0.00 0.33472 3
HA CT1 CT2 CA 9 0.00 0.16736 3
HA CT2 CPH1 CPH1 9 0.00 0.0 3
HA CT2 CY CA 9 180.00 1.046 2
HA CT2 CY CPT 9 180.00 1.046 2
HA CT2 NH1 C 9 0.00 0.0 3
HA CT2 NH1 H 9 0.00 0.0 3
HA CT2 S CT3 9 0.00 1.17152 3
HA CT3 CPH1 CPH1 9 0.00 0.0 3
HA CT3 CS HA 9 0.00 0.66944 3
HA CT3 CT2 CA 9 0.00 0.16736 3
HA CT3 NH1 C 9 0.00 0.0 3
HA CT3 NH1 H 9 0.00 0.0 3
HA CT3 S CT2 9 0.00 1.17152 3
HA CY CA CPT 9 180.00 5.0208 2
HA CY CA HA 9 180.00 5.0208 2
HA CY CPT CA 9 180.00 12.552 2
HA CY CPT CPT 9 180.00 12.552 2
HE1 CE1 CE1 HE1 9 180.00 4.184 2
CT3 CE1 CE1 HE1 9 180.00 4.184 2
HE1 CE1 CE2 HE2 9 180.00 21.7568 2
HE1 CE1 CT2 HA 9 0.00 0.0 3
HE1 CE1 CT2 CT3 9 0.00 0.50208 3
HE1 CE1 CT3 HA 9 0.00 0.0 3
HE2 CE2 CE1 CT2 9 180.00 21.7568 2
HE2 CE2 CE1 CPB 9 180.00 21.7568 2
HB CP1 N C 9 0.00 3.3472 3
HB CP1 N CP3 9 0.00 0.4184 3
HB CP1 NP CP3 9 0.00 0.33472 3
HB CT1 NH1 C 9 0.00 0.0 1
HB CT1 NH1 H 9 0.00 0.0 1
HB CT2 NH1 C 9 0.00 0.0 1
HB CT2 NH1 H 9 0.00 0.0 1
HB CT3 NH1 C 9 0.00 0.0 1
HB CT3 NH1 H 9 0.00 0.0 1
HC NH2 CT2 CT2 9 0.00 0.46024 3
HC NH2 CT2 HA 9 0.00 0.46024 3
HC NH2 CT2 HB 9 0.00 0.46024 3
HC NH2 CT2 CD 9 0.00 0.46024 3
HC NP CP1 C 9 0.00 0.33472 3
HC NP CP1 CC 9 0.00 0.33472 3
HC NP CP1 CD 9 0.00 0.33472 3
HC NP CP1 CP2 9 0.00 0.33472 3
HC NP CP1 HB 9 0.00 0.33472 3
HC NP CP3 CP2 9 0.00 0.33472 3
HC NP CP3 HA 9 0.00 0.33472 3
HP CA CA CA 9 180.00 17.5728 2
HP CA CA CPT 9 180.00 12.552 2
HP CA CA CT2 9 180.00 17.5728 2
HP CA CA CT3 9 180.00 17.5728 2
HP CA CA HP 9 180.00 10.0416 2
HP CA CPT CPT 9 180.00 12.552 2
HP CA CPT CY 9 180.00 12.552 2
HP CA CY CPT 9 180.00 8.368 2
HP CA CY CT2 9 180.00 5.0208 2
HP CA NY CPT 9 180.00 8.368 2
HP CA NY H 9 180.00 1.6736 2
HP CY CA HP 9 180.00 4.184 2
HP CY CPT CA 9 180.00 11.7152 2
HP CY CPT CPT 9 180.00 11.7152 2
HR1 CPH1 CPH1 CT2 9 180.00 4.184 2
HR1 CPH1 CPH1 CT3 9 180.00 4.184 2
HR1 CPH1 CPH1 HR1 9 180.00 4.184 2
HR1 CPH1 NR3 CPH2 9 180.00 10.46 2
HR1 CPH1 NR3 H 9 180.00 12.552 2
HR1 CPH2 NR1 CPH1 9 180.00 12.552 2
HR1 CPH2 NR1 H 9 180.00 4.184 2
HR1 CPH2 NR2 CPH1 9 180.00 12.552 2
HR2 CPH2 NR3 CPH1 9 180.00 12.552 2
HR2 CPH2 NR3 H 9 180.00 0.0 2
HR3 CPH1 CPH1 CT2 9 180.00 8.368 2
HR3 CPH1 CPH1 CT3 9 180.00 8.368 2
HR3 CPH1 CPH1 HR3 9 180.00 8.368 2
HR3 CPH1 NR1 CPH2 9 180.00 12.552 2
HR3 CPH1 NR1 H 9 180.00 4.184 2
HR3 CPH1 NR2 CPH2 9 180.00 12.552 2
HS S CT2 CT1 9 0.00 1.00416 1
HS S CT2 CT1 9 0.00 0.6276 2
HS S CT2 CT1 9 0.00 1.12968 3
HS S CT2 CT3 9 0.00 1.00416 1
HS S CT2 CT3 9 0.00 0.6276 2
HS S CT2 CT3 9 0.00 1.12968 3
HS S CT2 HA 9 0.00 0.8368 3
HS S CT3 HA 9 0.00 0.8368 3
N C CP1 CP2 9 0.00 1.6736 1
N C CP1 CP2 9 0.00 2.5104 2
N C CP1 HB 9 180.00 1.6736 1
N C CP1 HB 9 0.00 2.5104 2
N C CP1 N 9 0.00 1.2552 1
N C CP1 N 9 0.00 -1.2552 4
N C CT1 CT1 9 0.00 0.0 1
N C CT1 CT2 9 0.00 0.0 1
N C CT1 CT3 9 0.00 0.0 1
N C CT1 HB 9 0.00 0.0 1
N C CT2 HB 9 0.00 0.0 1
N C CT3 HA 9 0.00 0.0 1
N CT1 CT2 CA 9 0.00 0.16736 3
NH1 C CP1 CP2 9 0.00 1.6736 1
NH1 C CP1 CP2 9 0.00 2.5104 2
NH1 C CP1 HB 9 180.00 1.6736 1
NH1 C CP1 HB 9 0.00 2.5104 2
NH1 C CP1 N 9 0.00 1.2552 1
NH1 C CP1 N 9 0.00 -1.2552 4
NH1 C CT1 CT1 9 0.00 0.0 1
NH1 C CT1 CT2 9 0.00 0.0 1
NH1 C CT1 CT3 9 0.00 0.0 1
NH1 C CT1 HB 9 0.00 0.0 1
NH1 C CT1 NH1 9 0.00 2.5104 1
NH1 C CT2 CT2 9 0.00 0.0 1
NH1 C CT2 HA 9 0.00 0.0 3
NH1 C CT2 HB 9 0.00 0.0 1
NH1 C CT2 NH1 9 0.00 2.5104 1
NH1 C CT3 HA 9 0.00 0.0 3
NH1 CT1 C N 9 0.00 1.6736 1
NH1 CT2 C N 9 0.00 1.6736 1
NH2 CC CP1 CP2 9 0.00 1.6736 1
NH2 CC CP1 CP2 9 0.00 2.5104 2
NH2 CC CP1 HB 9 180.00 1.6736 1
NH2 CC CP1 HB 9 0.00 2.5104 2
NH2 CC CP1 N 9 0.00 1.2552 1
NH2 CC CP1 N 9 0.00 -1.2552 4
NH2 CC CT2 HA 9 180.00 0.0 3
NH3 CT1 C N 9 0.00 1.6736 1
NH3 CT1 C NH1 9 0.00 2.5104 1
NH3 CT1 CC NH2 9 0.00 1.6736 1
NH3 CT2 C N 9 0.00 1.6736 1
NH3 CT2 C NH1 9 0.00 1.6736 1
NH3 CT2 CC NH2 9 0.00 1.6736 1
NP CP1 C N 9 0.00 1.2552 1
NP CP1 C NH1 9 0.00 1.2552 1
NP CP1 CC NH2 9 0.00 1.2552 1
NR1 CPH1 CPH1 CT2 9 180.00 12.552 2
NR1 CPH1 CPH1 CT3 9 180.00 12.552 2
NR1 CPH1 CPH1 HR3 9 180.00 12.552 2
NR1 CPH1 CT2 CT1 9 0.00 0.79496 3
NR1 CPH1 CT2 CT2 9 0.00 0.79496 3
NR1 CPH1 CT2 CT3 9 0.00 0.79496 3
NR1 CPH1 CT2 HA 9 0.00 0.79496 3
NR1 CPH1 CT3 HA 9 0.00 0.79496 3
NR1 CPH2 NR2 CPH1 9 180.00 58.576 2
NR2 CPH1 CPH1 CT2 9 180.00 12.552 2
NR2 CPH1 CPH1 CT3 9 180.00 12.552 2
NR2 CPH1 CPH1 HR3 9 180.00 12.552 2
NR2 CPH1 CPH1 NR1 9 180.00 58.576 2
NR2 CPH1 CT2 CT1 9 0.00 0.79496 3
NR2 CPH1 CT2 CT2 9 0.00 0.79496 3
NR2 CPH1 CT2 CT3 9 0.00 0.79496 3
NR2 CPH1 CT2 HA 9 0.00 0.79496 3
NR2 CPH1 CT3 HA 9 0.00 0.79496 3
NR2 CPH2 NR1 CPH1 9 180.00 58.576 2
NR2 CPH2 NR1 H 9 180.00 4.184 2
NR3 CPH1 CPH1 CT2 9 180.00 10.46 2
NR3 CPH1 CPH1 CT3 9 180.00 10.46 2
NR3 CPH1 CPH1 HR1 9 180.00 10.46 2
NR3 CPH1 CPH1 NR3 9 180.00 50.208 2
NR3 CPH1 CT2 CT1 9 0.00 0.79496 3
NR3 CPH1 CT2 CT2 9 0.00 0.79496 3
NR3 CPH1 CT2 CT3 9 0.00 0.79496 3
NR3 CPH1 CT2 HA 9 0.00 0.79496 3
NR3 CPH1 CT3 HA 9 0.00 0.79496 3
NR3 CPH2 NR3 CPH1 9 180.00 50.208 2
NR3 CPH2 NR3 H 9 180.00 5.8576 2
NY CA CY CPT 9 180.00 16.736 2
NY CA CY CT2 9 180.00 14.644 2
NY CA CY HA 9 180.00 14.644 2
NY CA CY HP 9 180.00 14.644 2
NY CPT CA CA 9 180.00 11.7152 2
NY CPT CA HA 9 180.00 16.736 2
NY CPT CA HP 9 180.00 12.552 2
NY CPT CPT CA 9 180.00 41.84 2
NY CPT CPT CY 9 180.00 20.92 2
O C CP1 CP2 9 180.00 1.6736 1
O C CP1 CP2 9 0.00 2.5104 2
O C CP1 HB 9 0.00 1.6736 1
O C CP1 HB 9 0.00 2.5104 2
O C CP1 N 9 0.00 -1.2552 4
O C CT1 CT1 9 0.00 5.8576 1
O C CT1 CT2 9 0.00 5.8576 1
O C CT1 CT3 9 0.00 5.8576 1
O C CT1 HB 9 0.00 0.0 1
O C CT1 NH1 9 0.00 0.0 1
O C CT1 NH3 9 0.00 0.0 1
O C CT2 CT2 9 0.00 5.8576 1
O C CT2 HA 9 180.00 0.0 3
O C CT2 HB 9 0.00 0.0 1
O C CT2 NH1 9 0.00 0.0 1
O C CT2 NH3 9 0.00 0.0 1
O C CT3 HA 9 180.00 0.0 3
O C N CP1 9 180.00 11.506 2
O C N CP1 9 0.00 1.2552 4
O C N CP3 9 180.00 11.506 2
O C N CP3 9 0.00 1.2552 4
O C NH1 CT1 9 180.00 10.46 2
O C NH1 CT2 9 180.00 10.46 2
O C NH1 CT3 9 180.00 10.46 2
O C NH1 H 9 180.00 10.46 2
O CC CP1 CP2 9 180.00 1.6736 1
O CC CP1 CP2 9 0.00 2.5104 2
O CC CP1 HB 9 0.00 1.6736 1
O CC CP1 HB 9 0.00 2.5104 2
O CC CP1 N 9 0.00 -1.2552 4
O CC CT2 HA 9 180.00 0.0 3
O CC NH2 H 9 180.00 5.8576 2
OB CD OS CT2 9 180.00 4.03756 1
OB CD OS CT2 9 180.00 16.1084 2
OB CD OS CT3 9 180.00 4.03756 1
OB CD OS CT3 9 180.00 16.1084 2
OC CA CA CA 9 180.00 12.9704 2
OC CA CA HP 9 180.00 17.5728 2
OC CC CP1 CP2 9 0.00 0.66944 3
OC CC CP1 HB 9 0.00 0.66944 3
OC CC CP1 N 9 0.00 0.66944 3
OC CC CP1 NP 9 0.00 0.66944 3
OC CC CT1 NH3 9 180.00 13.3888 2
OC CC CT2 NH3 9 180.00 13.3888 2
OH1 CA CA CA 9 180.00 12.9704 2
OH1 CA CA HP 9 180.00 17.5728 2
S CT2 CT2 HA 9 0.00 0.04184 3
SM CT2 CT2 HA 9 0.00 0.04184 3
SM SM CT2 CT1 9 0.00 1.29704 3
SM SM CT2 CT2 9 0.00 1.29704 3
SM SM CT2 HA 9 0.00 0.661072 3
SM SM CT3 HA 9 0.00 0.661072 3
SS CS CT3 HA 9 0.00 0.6276 3
OBL CL CTL2 HAL2 9 180.00 0.0 6
OBL CL CTL3 HAL3 9 180.00 0.0 6
OSL CL CTL2 HAL2 9 180.00 0.0 6
OSL CL CTL3 HAL3 9 180.00 0.0 6
OBL CL OSL CTL1 9 180.00 4.03756 1
OBL CL OSL CTL1 9 180.00 16.1084 2
OBL CL OSL CTL2 9 180.00 4.03756 1
OBL CL OSL CTL2 9 180.00 16.1084 2
OBL CL OSL CTL3 9 180.00 4.03756 1
OBL CL OSL CTL3 9 180.00 16.1084 2
HAL2 CTL2 CL OHL 9 180.00 0.0 6
HAL3 CTL3 CL OHL 9 180.00 0.0 6
OSL PL OSL CTL2 9 180.00 5.0208 1
OSL PL OSL CTL2 9 180.00 0.4184 2
OSL PL OSL CTL2 9 180.00 0.4184 3
O2L PL OSL CTL2 9 0.00 0.4184 3
OSL PL OSL CTL3 9 180.00 5.0208 1
OSL PL OSL CTL3 9 180.00 0.4184 2
OSL PL OSL CTL3 9 180.00 0.4184 3
O2L PL OSL CTL3 9 0.00 0.4184 3
OHL PL OSL CTL2 9 0.00 3.9748 2
OHL PL OSL CTL2 9 0.00 2.092 3
OHL PL OSL CTL3 9 0.00 3.9748 2
OHL PL OSL CTL3 9 0.00 2.092 3
CTL3 CTL2 OSL CL 9 180.00 2.9288 1
CTL2 CTL2 OSL CL 9 180.00 2.9288 1
CTL3 CTL1 OSL CL 9 180.00 2.9288 1
CTL2 CTL1 OSL CL 9 180.00 2.9288 1
CTL1 CTL2 CL OSL 9 180.00 -0.6276 1
CTL1 CTL2 CL OSL 9 180.00 2.21752 2
CTL2 CTL2 CL OSL 9 180.00 -0.6276 1
CTL2 CTL2 CL OSL 9 180.00 2.21752 2
CTL3 CTL2 CL OSL 9 180.00 -0.6276 1
CTL3 CTL2 CL OSL 9 180.00 2.21752 2
NH3L CTL2 CTL2 OHL 9 180.00 2.9288 1
NH3L CTL2 CTL2 OSL 9 180.00 2.9288 1
NTL CTL2 CTL2 OHL 9 180.00 17.9912 1
NTL CTL2 CTL2 OHL 9 180.00 -1.6736 3
NTL CTL2 CTL2 OSL 9 180.00 13.8072 1
NTL CTL2 CTL2 OSL 9 180.00 -1.6736 3
CTL3 CTL2 CTL2 CTL3 9 180.00 0.4184 2
CTL3 CTL2 CTL2 CTL3 9 0.00 0.6276 4
CTL3 CTL2 CTL2 CTL3 9 180.00 0.4184 6
CTL2 CTL2 CTL2 CTL3 9 180.00 0.4184 2
CTL2 CTL2 CTL2 CTL3 9 0.00 0.6276 4
CTL2 CTL2 CTL2 CTL3 9 180.00 0.4184 6
CTL2 CTL2 CTL2 CTL2 9 180.00 0.4184 2
CTL2 CTL2 CTL2 CTL2 9 0.00 0.6276 4
CTL2 CTL2 CTL2 CTL2 9 180.00 0.4184 6
HAL3 CTL3 OSL SL 9 0.00 0.0 3
CTL2 OSL SL O2L 9 0.00 0.0 3
CTL3 OSL SL O2L 9 0.00 0.0 3
HEL1 CEL1 CEL1 HEL1 9 180.00 4.184 2
CTL3 CEL1 CEL1 HEL1 9 180.00 4.184 2
CTL2 CEL1 CEL2 HEL2 9 180.00 21.7568 2
CTL3 CEL1 CEL2 HEL2 9 180.00 21.7568 2
HEL1 CEL1 CEL2 HEL2 9 180.00 21.7568 2
CEL1 CEL1 CTL2 HAL2 9 0.00 0.12552 3
CEL1 CEL1 CTL3 HAL3 9 0.00 0.12552 3
CEL1 CEL1 CTL2 CTL2 9 180.00 2.092 1
CEL1 CEL1 CTL2 CTL2 9 180.00 5.4392 3
CEL1 CEL1 CTL2 CTL3 9 180.00 2.092 1
CEL1 CEL1 CTL2 CTL3 9 180.00 5.4392 3
CEL2 CEL1 CTL2 CTL2 9 180.00 2.092 1
CEL2 CEL1 CTL2 CTL2 9 180.00 5.4392 3
CEL2 CEL1 CTL2 CTL3 9 180.00 2.092 1
CEL2 CEL1 CTL2 CTL3 9 180.00 5.4392 3
CEL2 CEL1 CTL2 HAL2 9 0.00 0.50208 3
CEL2 CEL1 CTL3 HAL3 9 180.00 0.2092 3
HEL1 CEL1 CTL2 CTL2 9 0.00 0.50208 3
HEL1 CEL1 CTL2 CTL3 9 0.00 0.50208 3
HEL1 CEL1 CTL2 HAL2 9 0.00 0.0 3
HEL1 CEL1 CTL3 HAL3 9 0.00 0.0 3
CEL2 CEL1 CTL2 CEL1 9 180.00 5.0208 1
CEL2 CEL1 CTL2 CEL1 9 180.00 1.6736 2
CEL2 CEL1 CTL2 CEL1 9 180.00 5.4392 3
CEL1 CTL2 CEL1 HEL1 9 0.00 0.0 2
CEL1 CTL2 CEL1 HEL1 9 0.00 0.0 3
CEL1 CEL1 CTL2 CEL1 9 180.00 4.184 1
CEL1 CEL1 CTL2 CEL1 9 0.00 0.4184 2
CEL1 CEL1 CTL2 CEL1 9 180.00 1.2552 3
CEL1 CEL1 CTL2 CEL1 9 0.00 0.8368 4
CTL3 CTL2 CTL2 CL 9 180.00 0.87864 1
CTL3 CTL2 CTL2 CL 9 0.00 1.63176 2
CTL3 CTL2 CTL2 CL 9 180.00 1.4644 3
CTL3 CTL2 CTL2 CL 9 0.00 0.46024 4
CTL3 CTL2 CTL2 CL 9 180.00 0.37656 6
CTL2 CTL2 CTL2 CL 9 180.00 0.87864 1
CTL2 CTL2 CTL2 CL 9 0.00 1.63176 2
CTL2 CTL2 CTL2 CL 9 180.00 1.4644 3
CTL2 CTL2 CTL2 CL 9 0.00 0.46024 4
CTL2 CTL2 CTL2 CL 9 180.00 0.37656 6
; ### for COOH terminal
CP3 N CP1 CD 9 0.00 0.4184 3
; ### for NH2 terminal
H NH2 CT1 C 9 0.00 0.0 1
H NH2 CT1 CT1 9 0.00 0 1 ; from H-NH1-CT1-CT1
H NH2 CT1 CT2 9 0.00 0.46024 3 ; correct?
H NH2 CT1 CT3 9 0.00 0.0 1
H NH2 CT1 HB 9 0.00 0.46024 3
NH2 CT1 C O 9 0.00 0.0 1
NH2 CT1 C NH1 9 0.00 2.5104 1 ; from NH1-C-CT1-NH1 and NH3-CT1-C-NH1
NH2 CT1 C N 9 0.00 1.6736 1 ; from NH1-CT2-C-N and NH3-CT1-C-N
; ### for GLY-NH2 terminal
H NH2 CT2 HB 9 0.00 0.46024 3 ; from H-NH2-CT1-HB
H NH2 CT2 C 9 0.00 0.0 1 ; from H-NH2-CT1-C
NH2 CT2 C O 9 0.00 0.0 1 ; from NH2-CT1-C-O
NH2 CT2 C NH1 9 0.00 2.5104 1 ; from NH1-C-CT1-NH1 and NH3-CT1-C-NH1
NH2 CT2 C N 9 0.00 1.6736 1 ; from NH1-CT2-C-N and NH3-CT1-C-N
; ###
X FE SS X 9 0.00 0.0 4
X CS SS X 9 0.20 0.0 3
X C NC2 X 9 180.00 9.414 2
X CD OH1 X 9 180.00 8.5772 2
X CD OS X 9 180.00 8.5772 2
X CE1 CE1 X 9 0.00 0.6276 1
X CE1 CE1 X 9 180.00 35.564 2
X CE2 CE2 X 9 180.00 20.5016 2
X CP1 C X 9 180.00 0.0 6
X CP1 CC X 9 180.00 0.0 6
X CP1 CD X 9 180.00 0.0 6
X CP1 CP2 X 9 0.00 0.58576 3
X CP2 CP2 X 9 0.00 0.66944 3
X CP3 CP2 X 9 0.00 0.58576 3
X CPA CPB X 9 0.00 0.0 2
X CPA CPM X 9 0.00 0.0 2
X CPB CE1 X 9 180.00 12.552 2
X CPB CPB X 9 0.00 0.0 2
X CPB CT2 X 9 0.00 0.0 6
X CPB CT3 X 9 0.00 0.0 6
X CPT CPT X 9 180.00 0.0 2
X CT1 CC X 9 180.00 0.2092 6
X CT1 CD X 9 180.00 0.0 6
X CT1 CT1 X 9 0.00 0.8368 3
X CT1 CT2 X 9 0.00 0.8368 3
X CT1 CT3 X 9 0.00 0.8368 3
X CT1 NH3 X 9 0.00 0.4184 3
X CT1 OH1 X 9 0.00 0.58576 3
X CT1 OS X 9 0.00 -0.4184 3
X CT2 CA X 9 0.00 0.0 6
X CT2 CC X 9 180.00 0.2092 6
X CT2 CD X 9 180.00 0.0 6
X CT2 CT2 X 9 0.00 0.81588 3
X CT2 CT3 X 9 0.00 0.66944 3
X CT2 NC2 X 9 180.00 0.0 6
X CT2 NH3 X 9 0.00 0.4184 3
X CT2 OH1 X 9 0.00 0.58576 3
X CT2 OS X 9 0.00 -0.4184 3
X CT3 CA X 9 0.00 0.0 6
X CT3 CC X 9 180.00 0.2092 6
X CT3 CD X 9 180.00 0.0 6
X CT3 CT3 X 9 0.00 0.64852 3
X CT3 NC2 X 9 180.00 0.0 6
X CT3 NH2 X 9 0.00 0.46024 3
X CT3 NH3 X 9 0.00 0.37656 3
X CT3 OH1 X 9 0.00 0.58576 3
X CT3 OS X 9 0.00 -0.4184 3
X FE CM X 9 0.00 0.2092 4
X FE NPH X 9 0.00 0.0 2
; ### For Heme bound to HSD
; Charmm patch PHEM defines only one dihedral term: 1CD2 1NE2 2FE 2NA
; (1 = HSD, 2 = HEME)
; In gromacs we cannot differentiate between NA, NB, NC, and ND of the heme.
; (values cannot be attributed in the rtp file for dihedrals involving atoms
; from other residues)
; So we divide the original force constant (0.2092) by four.
NPH FE NR2 CPH1 9 0.00 0.0 4 ; This one is always zero.
NPH FE NR2 CPH2 9 0.00 0.0523 4 ; This is X-FE-NR2-X from charmm
FE NR2 CPH1 X 9 0.00 0.0 1
FE NR2 CPH2 X 9 0.00 0.0 1
; ### For Heme bound to O2 or CO, we dont have to do this trick, because the force constant is 0.0
X FE OM X 9 0.00 0.0 4
OM FE NR2 X 9 0.00 0.0 1
CM FE NR2 X 9 0.00 0.0 1
; ###
X NPH CPA X 9 0.00 0.0 2
X CTL1 OHL X 9 0.00 0.58576 3
X CTL2 OHL X 9 0.00 0.58576 3
X CTL3 OHL X 9 0.00 0.58576 3
X CL OSL X 9 180.00 8.5772 2
X CTL2 CL X 9 180.00 0.2092 6
X CTL3 CL X 9 180.00 0.2092 6
X CL OHL X 9 180.00 8.5772 2
X OHL PL X 9 0.00 1.2552 3
X CTL1 OSL X 9 0.00 0.0 3
X CTL2 OSL X 9 0.00 0.0 3
X CTL3 OSL X 9 0.00 0.0 3
X CTL2 NTL X 9 0.00 1.08784 3
X CTL5 NTL X 9 0.00 0.96232 3
X CTL2 NH3L X 9 0.00 0.4184 3
X CTL1 CTL1 X 9 0.00 0.8368 3
X CTL1 CTL2 X 9 0.00 0.8368 3
X CTL1 CTL3 X 9 0.00 0.8368 3
X CTL2 CTL2 X 9 0.00 0.79496 3
X CTL2 CTL3 X 9 0.00 0.66944 3
X CTL3 CTL3 X 9 0.00 0.63806 3
X CEL1 CEL1 X 9 0.00 0.6276 1
X CEL1 CEL1 X 9 180.00 35.564 2
X CEL2 CEL2 X 9 180.00 20.5016 2
[ dihedraltypes ]
; i j k l func q0 cq
CPB CPA NPH CPA 2 0.0000 174.0544
HA CPA CPA CPM 2 0.0000 246.0192
HE2 HE2 CE2 CE2 2 0.00 25.104
HR1 NR1 NR2 CPH2 2 0.0000 4.184
HR1 NR2 NR1 CPH2 2 0.0000 4.184
HR3 CPH1 NR1 CPH1 2 0.0000 4.184
HR3 CPH1 NR2 CPH1 2 0.0000 4.184
HR3 CPH1 NR3 CPH1 2 0.0000 8.368
HR3 NR1 CPH1 CPH1 2 0.0000 4.184
HR3 NR2 CPH1 CPH1 2 0.0000 4.184
N C CP1 CP3 2 0.0000 0.0
NPH CPA CPA FE 2 0.0000 1149.7632
NPH CPA CPB CPB 2 0.0000 339.7408
NPH CPA CPM CPA 2 0.0000 153.1344
NPH CPM CPB CPA 2 0.0000 273.6336
NR1 CPH1 CPH2 H 2 0.0000 3.7656
NR1 CPH2 CPH1 H 2 0.0000 3.7656
NR3 CPH1 CPH2 H 2 0.0000 10.0416
NR3 CPH2 CPH1 H 2 0.0000 10.0416
NY CA CY CPT 2 0.0000 836.8
O CP1 NH2 CC 2 0.0000 376.56
O CT1 NH2 CC 2 0.0000 376.56
O CT2 NH2 CC 2 0.0000 376.56
O CT3 NH2 CC 2 0.0000 376.56
O HA NH2 CC 2 0.0000 376.56
O N CT2 CC 2 0.0000 1004.16
O NH2 CP1 CC 2 0.0000 376.56
O NH2 CT1 CC 2 0.0000 376.56
O NH2 CT2 CC 2 0.0000 376.56
O NH2 CT3 CC 2 0.0000 376.56
O NH2 HA CC 2 0.0000 376.56
HEL2 HEL2 CEL2 CEL2 2 0.00 25.104
CPB X X CE1 2 0.0000 753.12
CT2 X X CPB 2 0.0000 753.12
CT3 X X CPB 2 0.0000 753.12
NC2 X X C 2 0.0000 334.72
NH1 X X H 2 0.0000 167.36
NH2 X X H 2 0.0000 33.472
O X X C 2 0.0000 1004.16
OB X X CD 2 0.0000 836.8
OC X X CC 2 0.0000 803.328
CC X X CT1 2 0.0000 803.328
CC X X CT2 2 0.0000 803.328
CC X X CT3 2 0.0000 803.328
OBL X X CL 2 0.00 836.8
OCL X X CL 2 0.00 803.328
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