/usr/lib/python2.7/dist-packages/asrun/execution.py is in code-aster-run 1.13.1-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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# ==============================================================================
# COPYRIGHT (C) 1991 - 2003 EDF R&D WWW.CODE-ASTER.ORG
# THIS PROGRAM IS FREE SOFTWARE; YOU CAN REDISTRIBUTE IT AND/OR MODIFY
# IT UNDER THE TERMS OF THE GNU GENERAL PUBLIC LICENSE AS PUBLISHED BY
# THE FREE SOFTWARE FOUNDATION; EITHER VERSION 2 OF THE LICENSE, OR
# (AT YOUR OPTION) ANY LATER VERSION.
#
# THIS PROGRAM IS DISTRIBUTED IN THE HOPE THAT IT WILL BE USEFUL, BUT
# WITHOUT ANY WARRANTY; WITHOUT EVEN THE IMPLIED WARRANTY OF
# MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE. SEE THE GNU
# GENERAL PUBLIC LICENSE FOR MORE DETAILS.
#
# YOU SHOULD HAVE RECEIVED A COPY OF THE GNU GENERAL PUBLIC LICENSE
# ALONG WITH THIS PROGRAM; IF NOT, WRITE TO EDF R&D CODE_ASTER,
# 1 AVENUE DU GENERAL DE GAULLE, 92141 CLAMART CEDEX, FRANCE.
# ==============================================================================
"""
This modules gives functions to start up Code_Aster executions.
"""
import os
import os.path as osp
import re
from glob import glob
from math import log10
from asrun.installation import confdir
from asrun.common.i18n import _
from asrun.mystring import print3, ufmt, file_cleanCR
from asrun.build import glob_unigest
from asrun.mpi import MPI_INFO
from asrun.profil import AsterProfil, ExportEntry
from asrun.common_func import get_tmpname
from asrun.common.utils import getpara, check_joker, hms2s
from asrun.common.sysutils import on_64bits
def dict_typ_test(test):
"""supported file types + ['com?', '[0-9]*']
"""
return {
'comm' : ('fort.1' , 1),
'mail' : ('fort.20', 20),
'mmed' : ('fort.20', 20),
'med' : ('fort.20', 20),
'datg' : ('fort.16', 16),
'mgib' : ('fort.19', 19),
'msh' : ('fort.19', 19),
'msup' : ('fort.19', 19),
'para' : ('%s.para' % test, 0),
'ensi' : ('DONNEES_ENSIGHT', 0),
'repe' : ('REPE_IN', 0),
}
def dict_typ_result():
"""supported file types : resu, rmed
"""
return {
'mess' : ('fort.6', 6),
'resu' : ('fort.8', 8),
'dat' : ('fort.29', 29),
'rmed' : ('fort.80', 80),
'pos' : ('fort.37', 37),
'base' : ('unused', 0),
'bhdf' : ('unused', 0),
}
def execute(reptrav, multiple=False, with_dbg=False, only_env=False,
follow_output=True, fpara=None, facmtps=1.,
mpi_info=None, **kargs):
"""Run a Code_Aster execution in 'reptrav'.
Arguments :
multiple : False if only one execution is run (so stop if it fails),
True if several executions are run (don't stop when error occurs)
with_dbg : start debugger or not,
fpara : deprecated,
follow_output : print output to follow the execution,
kargs give "run, conf, prof, build" instances + exec name
Return a tuple (diag, tcpu, tsys, ttot, validbase).
"""
# 1. ----- initializations
run = kargs['run']
conf = kargs['conf']
prof = kargs['prof']
build = kargs['build']
exetmp = kargs['exe']
ctest = kargs.get('cas_test', False)
tcpu = 0.
tsys = 0.
ttot = 0.
validbase = True
if mpi_info is None:
mpi_info = MPI_INFO()
mpi_info.set_rep_trav(reptrav)
interact = prof.args.has_key('interact') or \
prof.args['args'].find('-interact') > -1
os.chdir(reptrav)
# 2. ----- list of command files
list_comm = glob('fort.1.*')
list_comm.sort()
if osp.exists('fort.1'):
list_comm.insert(0, 'fort.1')
# 3. ----- arguments list
drep = { 'REPOUT' : 'rep_outils', 'REPMAT' : 'rep_mat', 'REPDEX' : 'rep_dex' }
cmd = []
cmd.append(osp.join(conf['REPPY'][0], conf['ARGPYT'][0]))
cmd.extend(conf['ARGEXE'])
cmd.append('-commandes fort.1')
cmd_memtps = {}
for k, v in prof.args.items():
if k == 'args':
cmd.append(prof.args[k])
elif k in ('memjeveux', 'memjeveux_stat', 'tpmax'):
cmd_memtps[k] = v
elif v.strip() == '' and k in drep.values():
run.Mess(_(u'empty value not allowed for "%s"') % k, '<A>_INVALID_PARAMETER')
else:
cmd.append('-%s %s' % (k, v))
# arguments which can be set in file 'config.txt'
for kconf, karg in drep.items():
if conf[kconf][0] != '' and not karg in prof.args.keys():
cmd.append('-'+karg+' '+conf[kconf][0])
ncpus = '1'
if prof['ncpus'][0] != '':
ncpus = prof['ncpus'][0]
# 4. ----- add parameters from prof
if on_64bits():
facW = 8
else:
facW = 4
tps = 0
memj = 0
memjs = 0
nbp = 0
try:
tps = int(float(prof.args['tpmax']))
except KeyError:
run.Mess(_(u'tpmax not provided in profile'), '<E>_INCORRECT_PARA')
except ValueError:
run.Mess(_(u'incorrect value for tpmax (%s) in profile') % \
prof.args['tpmax'], '<E>_INCORRECT_PARA')
try:
memj = float(prof.args['memjeveux'])
except KeyError:
run.Mess(_(u'memjeveux not provided in profile'), '<E>_INCORRECT_PARA')
except ValueError:
run.Mess(_(u'incorrect value for memjeveux (%s) in profile') % \
prof.args['memjeveux'], '<E>_INCORRECT_PARA')
try:
memjs = float(prof.args.get('memjeveux_stat', 0))
except ValueError:
run.Mess(_(u'incorrect value for memjeveux_stat (%s) in profile') % \
prof.args['memjeveux_stat'], '<E>_INCORRECT_PARA')
try:
nbp = int(ncpus)
except ValueError:
run.Mess(_(u'incorrect value for ncpus (%s) in profile') % \
prof['ncpus'][0], '<E>_INCORRECT_PARA')
# 4.1. check for memory, time and procs limits
run.Mess(_(u'Parameters : memory %d MB - time limit %d s') % (memj*facW, tps))
check_limits(run, prof['mode'][0], tps, memj*facW, nbp, mpi_info.nbnode(), mpi_info.nbcpu())
# check for previous errors (parameters)
if not multiple:
run.CheckOK()
elif run.GetGrav(run.diag) > run.GetGrav('<A>'):
run.Mess(_(u'error in parameters : %s') % run.diag)
return run.diag, tcpu, tsys, ttot, validbase
# 5. ----- only environment, print command lines to execute
if only_env:
run.Mess(ufmt(_(u'Code_Aster environment prepared in %s'), reptrav), 'OK')
run.Mess(_(u'To start execution copy/paste following lines in a ksh/bash shell :'))
run.Mess(' cd %s' % reptrav, 'SILENT')
run.Mess(' . %s' % osp.join(confdir, 'profile.sh'), 'SILENT')
tmp_profile = "profile_tmp.sh"
open(tmp_profile, 'w').write("""
export PYTHONPATH=$PYTHONPATH:.
export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:.
""")
# set per version environment
for f in conf.get_with_absolute_path('ENV_SH') + [tmp_profile]:
run.Mess(' . %s' % f, 'SILENT')
cmd.insert(0, osp.join('.', osp.basename(exetmp)))
# add memjeveux and tpmax
cmd.extend(['-%s %s' % (k, v) for k, v in cmd_memtps.items()])
cmdline = ' '.join(cmd)
# get pdb.py path
pdbpy_cmd = "import os, sys ; " \
"pdbpy = os.path.join(sys.prefix, 'lib', 'python' + sys.version[:3], 'pdb.py')"
d = {}
exec pdbpy_cmd in d
pdbpy = d['pdbpy']
if mpi_info.really(): #XXX and if not ? perhaps because of exit_code
cmdline = mpi_info.get_exec_command(cmdline,
add_tee=False,
env=conf.get_with_absolute_path('ENV_SH'))
# print command lines
k = 0
for fcomm in list_comm:
k += 1
run.Mess(_(u"Command line %d :") % k)
run.Mess(u"cp %s fort.1" % fcomm, 'SILENT')
run.Mess(cmdline, 'SILENT')
# how to start the Python debugger
if not mpi_info.really():
run.Mess(_(u'To start execution in the Python debugger you could type :'), 'SILENT')
pdb_cmd = cmdline.replace(osp.join('.', osp.basename(exetmp)),
'%s %s' % (osp.join('.', osp.basename(exetmp)),
' '.join(pdbpy.splitlines())))
run.Mess(u"cp %s fort.1" % fcomm, 'SILENT')
run.Mess(pdb_cmd, 'SILENT')
diag = 'OK'
# 6. ----- really execute
else:
# 6.1. content of reptrav
if not ctest:
run.Mess(ufmt(_(u'Content of %s before execution'), reptrav), 'TITLE')
kret, out = run.Shell(cmd='ls -la')
print3(out)
if len(list_comm) == 0:
run.Mess(_(u'no .comm file found'), '<E>_NO_COMM_FILE')
# check for previous errors (copy datas)
if not multiple:
run.CheckOK()
elif run.GetGrav(run.diag) > run.GetGrav('<A>'):
run.Mess(_(u'error occurs during preparing data : %s') % run.diag)
return run.diag, tcpu, tsys, ttot, validbase
# 6.2. complete command line
cmd.append('-suivi_batch')
add_tee = False
if with_dbg:
# how to run the debugger
cmd_dbg = run.config.get('cmd_dbg', '')
if not cmd_dbg:
run.Mess(_(u'command line to run the debugger not defined'),
'<F>_DEBUG_ERROR')
if cmd_dbg.find('gdb') > -1:
ldbg = ['break main', ]
else:
ldbg = ['stop in main', ]
# add memjeveux and tpmax
update_cmd_memtps(cmd_memtps)
cmd.extend(['-%s %s' % (k, v) for k, v in cmd_memtps.items()])
pos_memtps = -1
cmd_args = ' '.join(cmd)
ldbg.append('run ' + cmd_args)
cmd = getdbgcmd(cmd_dbg, osp.basename(exetmp), '', ldbg, cmd_args)
else:
add_tee = True
cmd.insert(0, osp.join('.', osp.basename(exetmp)))
# position where insert memjeveux+tpmax
pos_memtps = len(cmd)
os.environ['OMP_NUM_THREADS'] = str(ncpus)
# unlimit coredump size
try:
corefilesize = int(prof['corefilesize'][0]) * 1024*1024
except ValueError:
corefilesize = 'unlimited'
run.SetLimit('core', corefilesize)
# 6.3. if multiple .comm files, keep previous bases
if len(list_comm) > 1:
run.Mess(_(u'%d command files') % len(list_comm))
validbase = False
BASE_PREC = osp.join(reptrav, 'BASE_PREC')
run.MkDir(BASE_PREC)
# 6.4. for each .comm file
diag = '?'
k = 0
for fcomm in list_comm:
k += 1
os.chdir(mpi_info.reptrav())
run.Copy('fort.1', fcomm)
# start execution
tit = _(u'Code_Aster run')
run.timer.Start(tit)
# add memjeveux and tpmax at the right position
cmd_i = cmd[:]
update_cmd_memtps(cmd_memtps)
if pos_memtps > -1:
for key, value in cmd_memtps.items():
cmd_i.insert(pos_memtps, '-%s %s' % (key, value))
if not ctest:
run.Mess(tit, 'TITLE')
run.Mess(_(u'Command line %d :') % k)
if not run['verbose']:
run.Mess(' '.join(cmd_i))
cmd_exec = mpi_info.get_exec_command(' '.join(cmd_i),
add_tee=add_tee,
env=conf.get_with_absolute_path('ENV_SH'))
# go
iret, exec_output = run.Shell(cmd_exec, follow_output=follow_output, interact=interact)
if iret != 0:
for f in ('fort.6', 'fort.8', 'fort.9'):
run.FileCat(text="""\n <I>_EXIT_CODE = %s""" % iret, dest=f)
if not follow_output and not ctest:
print3(exec_output)
# mpirun does not include cpu/sys time of childrens, add it in timer
mpi_info.add_to_timer(exec_output, tit)
run.timer.Stop(tit)
if k < len(list_comm):
for b in glob('vola.*')+glob('loca.*'):
run.Delete(b)
if len(list_comm) > 1:
ldiag = build.GetDiag(cas_test=ctest)
diag_k = ldiag[0]
tcpu += ldiag[1]
tsys += ldiag[2]
ttot += ldiag[3]
run.FileCat('fort.6', 'fort_bis.6')
run.FileCat('fort.8', 'fort_bis.8')
run.FileCat('fort.9', 'fort_bis.9')
run.Delete('fort.6')
run.Delete('fort.8')
run.Delete('fort.9')
if re.search('<[ESF]{1}>', diag_k):
# switch <F> to <E> if multiple .comm
if diag_k.find('<F>') > -1:
diag_k = diag_k.replace('<F>', '<E>')
# ...and try to restore previous bases
run.Mess(ufmt(_(u'restore bases from %s'), BASE_PREC))
lbas = glob(osp.join(BASE_PREC, 'glob.*')) + \
glob(osp.join(BASE_PREC, 'bhdf.*')) + \
glob(osp.join(BASE_PREC, 'pick.*'))
if len(lbas) > 0:
run.Copy(os.getcwdu(), niverr='INFO', verbose=follow_output, *lbas)
else:
run.Mess(_(u'no glob/bhdf base to restore'), '<A>_ALARM')
run.Mess(_(u'execution aborted (comm file #%d)') % k, diag_k)
diag = diag_k
break
else:
# save bases in BASE_PREC if next execution fails
validbase = True
if k < len(list_comm):
if not ctest:
run.Mess(ufmt(_(u'save bases into %s'), BASE_PREC))
lbas = glob('glob.*') + \
glob('bhdf.*') + \
glob('pick.*')
run.Copy(BASE_PREC, niverr='INFO', verbose=follow_output, *lbas)
run.Mess(_(u'execution ended (comm file #%d)') % k, diag_k)
# the worst diagnostic
if run.GetGrav(diag) < run.GetGrav(diag_k):
diag = diag_k
# 6.5. global diagnostic
if len(list_comm) > 1:
run.Rename('fort_bis.6', 'fort.6')
run.Rename('fort_bis.8', 'fort.8')
run.Rename('fort_bis.9', 'fort.9')
else:
diag, tcpu, tsys, ttot, telap = build.GetDiag(cas_test=ctest)
validbase = run.GetGrav(diag) <= run.GetGrav('<S>')
if ctest and run.GetGrav(diag) < 0:
diag = '<F>_' + diag
run.Mess(_(u'Code_Aster run ended, diagnostic : %s') % diag)
# 6.6. post-mortem analysis of the core file
if not with_dbg:
cmd_dbg = run.config.get('cmd_post', '')
lcor = glob('core*')
if cmd_dbg and lcor:
run.Mess(_(u'Code_Aster run created a coredump'),
'<E>_CORE_FILE')
if not multiple:
# take the first one if several core files
core = lcor[0]
run.Mess(ufmt(_(u'core file name : %s'), core))
cmd = getdbgcmd(cmd_dbg, osp.basename(exetmp), core,
('where', 'quit'), '')
tit = _(u'Coredump analysis')
run.Mess(tit, 'TITLE')
run.timer.Start(tit)
iret, output = run.Shell(' '.join(cmd),
alt_comment='coredump analysis...', verbose=True)
if iret == 0 and not ctest:
print3(output)
run.timer.Stop(tit)
if not ctest:
# 6.7. content of reptrav
run.Mess(ufmt(_(u'Content of %s after execution'), os.getcwdu()), 'TITLE')
kret, out = run.Shell(cmd='ls -la . REPE_OUT')
print3(out)
# 6.8. print some informations
run.Mess(_(u'Size of bases'), 'TITLE')
lf = glob('vola.*')
lf.extend(glob('loca.*'))
lf.extend(glob('glob.*'))
lf.extend(glob('bhdf.*'))
lf.extend(glob('pick.*'))
for f in lf:
run.Mess(_(u'size of %s : %12d bytes') % (f, os.stat(f).st_size))
return diag, tcpu, tsys, ttot, validbase
def copyfiles(run, mode, prof, copybase=True, alarm=True):
"""Copy datas from profile into `pwd` (if mode=='DATA')
or results from `pwd` into destination given by profile (if mode=='RESU').
Aster bases are copied only if copybase is True.
Raise only <E> if an error occurs run CheckOK() after.
"""
if mode == 'DATA':
l_dico = prof.data
icomm = 0
ncomm = len(prof.Get('D', 'comm'))
for df in l_dico:
icomm = copyfileD(run, df, icomm, ncomm)
else:
l_dico = prof.resu
for df in l_dico:
copyfileR(run, df, copybase, alarm)
def copyfileD(run, df, icomm, ncomm):
"""Copy datas from `df` into current directory.
Raise only <E> if an error occurs run CheckOK() after.
"""
dest = None
# 1. ----- if logical unit is set : fort.*
if df['ul'] != 0 or df['type'] in ('nom',):
dest = 'fort.%d' % df['ul']
if df['type'] == 'nom':
dest = osp.basename(df['path'])
# exception for multiple command files (adding _N)
if df['ul'] == 1:
icomm += 1
format = '%%0%dd' % (int(log10(max(1, ncomm))) + 1)
dest = dest + '.' + format % icomm
# warning if file already exists
if run.Exists(dest):
run.Mess(ufmt(_(u"'%s' overwrites '%s'"), df['path'], dest), '<A>_COPY_DATA')
if df['compr']:
dest = dest + '.gz'
# 2. ----- bases and directories (ul=0)
else:
# base
if df['type'] in ('base', 'bhdf'):
dest = osp.basename(df['path'])
# ensi
elif df['type'] == 'ensi':
dest = 'DONNEES_ENSIGHT'
# repe
elif df['type'] == 'repe':
dest = 'REPE_IN'
if dest is not None:
# 3. --- copy
kret = run.Copy(dest, df['path'], niverr='<E>_COPY_ERROR', verbose=True)
# 4. --- decompression
if kret == 0 and df['compr']:
kret, dest = run.Gunzip(dest, niverr='<E>_DECOMPRESSION', verbose=True)
# 5. --- move the bases in main directory
if df['type'] in ('base', 'bhdf'):
for f in glob(osp.join(dest, '*')):
run.Rename(f, osp.basename(f))
# clean text files if necessary
if df['ul'] != 0 and run.IsTextFileWithCR(dest):
os.chmod(dest, 0644)
file_cleanCR(dest)
print3(ufmt(' ` ' + _(u'line terminators have been removed from %s'), dest))
return icomm
def copyfileR(run, df, copybase=True, alarm=True):
"""Copy results from current directory into destination given by `df`.
Aster bases are copied only if copybase is True.
Raise only <E> if an error occurs run CheckOK() after.
"""
# list of files
lf = []
isdir = False
# 1. ----- files
if df['ul'] != 0 or df['type'] in ('nom', ):
# if logical unit is set : fort.*
if df['ul'] != 0:
lf.append('fort.%d' % df['ul'])
elif df['type'] == 'nom':
lf.append(osp.basename(df['path']))
# 2. ----- bases and directories (ul=0)
else:
isdir = True
# base
if df['type'] == 'base' and copybase:
lf.extend(glob('glob.*'))
lf.extend(glob('pick.*'))
# bhdf
elif df['type'] == 'bhdf' and copybase:
lbas = glob('bhdf.*')
if len(lbas) == 0:
if alarm:
run.Mess(_(u"No 'bhdf' found, saving 'glob' instead"), '<A>_COPY_BASE')
lbas = glob('glob.*')
lf.extend(lbas)
lf.extend(glob('pick.*'))
# ensi / repe
elif df['type'] in ('ensi', 'repe'):
if df['type'] == 'ensi':
rep = 'RESU_ENSIGHT'
else:
rep = 'REPE_OUT'
lfrep = glob(osp.join(rep, '*'))
if len(lfrep) == 0 and alarm:
run.Mess(ufmt(_(u"%s directory is empty !"), rep), '<A>_COPY_REPE')
lf.extend(lfrep)
# 3. ----- compression
kret = 0
if df['compr']:
lfnam = lf[:]
lf = []
for fnam in lfnam:
kret, f = run.Gzip(fnam, niverr='<E>_COMPRES_ERROR', verbose=True)
lf.append(f)
# 4. ----- copy
if kret == 0 and len(lf) > 0:
# create destination
if isdir:
kret = run.MkDir(df['path'], '<E>_MKDIR_ERROR')
else:
if len(lf) > 1:
run.Mess(ufmt(_(u"""Only the first one of [%s] is copied."""), ', '.join(lf)),
'<A>_COPYFILE')
lf = [lf[0],]
kret = run.MkDir(osp.dirname(df['path']), '<E>_MKDIR_ERROR')
# copy
if kret == 0:
lfc = lf[:]
for fname in lfc:
if not osp.exists(fname):
if alarm:
run.Mess(ufmt(u"no such file or directory: %s", fname), '<A>_COPYFILE')
lf.remove(fname)
if len(lf) > 0:
kret = run.Copy(df['path'], niverr='<E>_COPY_ERROR', verbose=True, *lf)
# save base if failure
if kret != 0:
rescue = get_tmpname(run, basename='save_results')
run.Mess(ufmt(_(u"Saving results in a temporary directory (%s)."), rescue),
'<A>_COPY_RESULTS', store=True)
kret = run.MkDir(rescue, chmod=0700)
kret = run.Copy(rescue, niverr='<E>_COPY_ERROR',
verbose=True, *lf)
def build_test_export(run, conf, REPREF, reptest, test, resutest=None,
with_default=True, d_unig=None):
"""Return a profile for a testcase.
"""
lrep = [osp.join(REPREF, dt) for dt in conf['SRCTEST']]
if reptest:
lrep.extend(reptest)
for rep in lrep:
if run.IsRemote(rep):
run.Mess(ufmt(_(u'reptest (%s) must be on exec host'), rep),
'<F>_INVALID_DIR')
lrep = [run.PathOnly(rep) for rep in lrep]
lrm = []
if d_unig:
d_unig = glob_unigest(d_unig, REPREF)
lrm = set([osp.basename(f) for f in d_unig['test']])
export = _existing_file(test + '.export', lrep, last=True)
# new testcase with .export
if export:
prof = AsterProfil(run=run)
if with_default:
prof.add_default_parameters()
pexp = AsterProfil(export, run)
pexp.set_param_limits()
for entry in pexp.get_data():
if osp.basename(entry.path) in lrm:
run.Mess(ufmt(_(u'deleting %s (matches unigest)'),
osp.basename(entry.path)))
pexp.remove(entry)
found = _existing_file(entry.path, lrep, last=True)
if found is None:
run.Mess(ufmt(_(u'file not found : %s'), entry.path),
'<E>_FILE_NOT_FOUND')
pexp.remove(entry)
else:
entry.path = found
pexp._compatibility()
prof.update(pexp)
else:
# old version using .para
lall = []
for r in lrep:
f = osp.join(r, '%s.*' % test)
lall.extend(glob(f))
lf = []
for f in lall:
if osp.basename(f) in lrm:
run.Mess(ufmt(_(u'deleting %s (matches unigest)'), osp.basename(f)))
else:
lf.append(f)
prof = build_export_from_files(run, lf, test, with_default=with_default)
if resutest:
ftyp = { 'resu' : 8, 'mess' : 6, 'code' : 15 }
for typ, ul in ftyp.items():
new = ExportEntry(osp.join(resutest, '%s.%s' % (test, typ)),
type=typ, ul=ul,
result=True)
prof.add(new)
return prof
def build_export_from_files(run, lf, root="", with_default=True, with_results=False):
"""Build an export file from a list of files.
"""
prof = AsterProfil(run=run)
if with_default:
prof.add_default_parameters()
ddat = build_dict_file(run, prof, dict_typ_test(root), lf, ['com?', '[0-9]*'])
dres = {}
if with_results:
dres = build_dict_file(run, prof, dict_typ_result(), lf)
for dicf, dr in ((ddat, 'D'), (dres, 'R')):
lcom_i = []
for f, dico in dicf.items():
if dico['type'] != 'comm' or osp.splitext(f)[-1] == '.comm':
prof.Set(dr, dico)
else:
lcom_i.append([f, dico])
lcom_i.sort()
for f, dico in lcom_i:
prof.Set(dr, dico)
return prof
def build_dict_file(run, prof, dtyp, lf, opt_suffix=[]):
"""Build the dictionnary of files 'lf' matching the types defined
in 'dtyp'."""
dvu = {}
for typ0 in dtyp.keys() + opt_suffix:
if typ0 == 'comm': # always in com?
continue
for f in lf:
typ = typ0
if not check_joker(f, "."+typ):
continue
base = osp.basename(f)
if dvu.get(base):
run.DBG("'%s' overwrites by '%s'" % (base, f))
if typ == 'para':
iret, dico, msg = getpara(f, run['plate-forme'])
if iret != 0:
run.DBG("ERROR getpara :", msg)
prof.add_param_from_dict(dico)
continue
if typ[:3] == 'com': # comm ou com?
typ = 'comm'
ul = 1
elif dtyp.get(typ) != None:
ul = dtyp[typ][1]
else:
typ = 'libr'
try:
ul = int(f.split('.')[-1])
except ValueError:
ul = 0
dvu[base] = { 'type' : typ,
'isrep' : False,
'path' : f,
'ul' : ul,
'compr' : False }
return dvu
def add_all_results(prof, dest, jobname, dtyp=None):
"""Add all known results files to 'prof'."""
if dtyp is None:
dtyp = dict_typ_result
prof['copy_result_alarm'] = 'no'
for typ, value in dtyp().items():
if typ in ('base', 'bhdf'):
continue
path = osp.join(dest, "%s.%s" % (jobname, typ))
ul = value[1]
prof.Set('R',
{ 'path' : path, 'ul' : ul, 'type' : typ,
'isrep' : False, 'compr' : False})
def getdbgcmd(cmd_dbg, exe, core, lcmd, args):
"""Return the command line (as list) to run 'lcmd' in the debugger.
@E : executable
@C : coredump filename
@D : filename of debugger commands
@d : string of debugger commands
"""
# debugger commands string
cstr = ' ; '.join(lcmd)
ftmp = 'dbg_cmdfile'
# fill debugger commands file
f = open(ftmp, 'w')
f.write(os.linesep.join(lcmd) + os.linesep)
f.close()
# replace @ codes
cmd = cmd_dbg.replace('@E', exe)
cmd = cmd.replace('@C', core)
cmd = cmd.replace('@D', ftmp)
cmd = cmd.replace('@d', cstr)
cmd = cmd.replace('@a', args)
return [cmd]
def check_limits(run, mode, tps, mem, nbp, mpi_nbnoeud, mpi_nbcpu):
"""Return True if args are less than limits defined in
configuration file, False else.
"""
# time
try:
tpsmax = hms2s(run[mode+'_tpsmax'])
except ValueError:
run.Mess(_(u'Incorrect value (%s) for %s') % \
(str(run[mode+'_tpsmax']), mode+'_tpsmax'), '<F>_CONFIG_ERROR')
if tps > tpsmax:
run.Mess(_(u"""Requested time (%s s) is higher than the limit (%s s)""") % \
(tps, tpsmax), '<E>_INCORRECT_PARA')
# memory
try:
limit = int(run[mode+'_memmax'])
except ValueError:
run.Mess(_(u'Incorrect value (%s) for %s') % \
(str(run[mode+'_memmax']), mode+'_memmax'), '<F>_CONFIG_ERROR')
if mem > limit:
run.Mess(_(u"""Requested memory (%s MB) is higher than the limit (%s MB)""")%\
(mem, limit), '<E>_INCORRECT_PARA')
# ncpus
try:
limit = int(run[mode+'_nbpmax'])
except ValueError:
run.Mess(_(u'Incorrect value (%s) for %s') % \
(str(run[mode+'_nbpmax']), mode+'_nbpmax'), '<F>_CONFIG_ERROR')
if nbp > limit:
run.Mess(_(u"""Requested number of processors (%s) is higher than the limit (%s)""") %\
(nbp, limit), '<E>_INCORRECT_PARA')
# mpi nbcpu
para = mode + '_mpi_nbpmax'
try:
limit = int(run.get(para, 1))
except ValueError:
run.Mess(_(u'Incorrect value (%s) for %s') % \
(str(run.get(para, 1)), para), '<F>_CONFIG_ERROR')
if mpi_nbcpu > limit:
run.Mess(_(u"""Requested number of MPI processors (%s) is higher than the limit (%s)""") %\
(mpi_nbcpu, limit), '<E>_INCORRECT_PARA')
def update_cmd_memtps(dico):
"""Met à jour (ou non) les infos du dictionnaire contenant memjeveux et tpmax.
On traite uniquement : info_cpu (produit par E_JDC.py)
"""
# dictionnaire des infos lues
d = {}
try:
content = open('info_cpu', 'r').read().splitlines()
l_str = content[0].split()
l_fl = [float(s) for s in l_str]
d['cpu_total'], d['cpu_total_user'], d['cpu_total_syst'], d['cpu_restant'] = l_fl
except:
pass
# new values
dnew = {}
# tpmax
if d.get('cpu_restant') is not None:
dnew['tpmax'] = int(d['cpu_restant'])
dico.update(dnew)
def _existing_file(fname, l_paths, last=False):
"""Return the first (or `last` if True) existing file in `l_paths`.
Return None if `fname` is not found."""
l_paths = l_paths[:]
if last:
l_paths.reverse()
path = None
for dirn in l_paths:
if osp.exists(osp.join(dirn, fname)):
path = osp.join(dirn, fname)
break
return path
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