This file is indexed.

/usr/share/doc/avogadro-data/copyright is in avogadro-data 1.0.3-10.1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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This package was debianized by Jordan Mantha <mantha@ubuntu.com> on
Sat, 10 Nov 2007 16:09:59 -0800

It was downloaded from: http://sourceforge.net/projects/avogadro/

Upstream Authors:

  Geoffrey Hutchison et al.
  For the full list see /usr/share/doc/avogadro/AUTHORS.

Copyright:

  Copyright (C) 2006-2009 The Avogadro Project.
  Copyright (C) 2007 Shahzad Ali.
  Copyright (C) 2008 Michael Banck.
  Copyright (C) 2007 Ross Braithwaite.
  Copyright (C) 2007 James Bunt.
  Copyright (C) 2006-2008 Donald Ephraim Curtis.
  Copyright (C) 2008 Albert De Fusco.
  Copyright (C) 2007-2009 Marcus D. Hanwell.
  Copyright (C) 2006-2009 Geoffrey R. Hutchison.
  Copyright (C) 2006-2008 Benoit Jacob.
  Copyright (C) 2008 Naomi Fox.
  Copyright (C) 2007 Carsten.
  Copyright (C) 2007-2009 Tim Vandermeersch.
  Copyright (C) 1992-2008 Trolltech ASA.

  libavogadro/src/extensions/gamessinputdata.h:
  Copyright (C) 2004 Iowa State University

  libavogadro/src/extensions/shaders/vmd.frag,
  libavogadro/src/extensions/shaders/vmd.vert:
  Copyright (C) 1995-2007 The Board of Trustees of the University of Illinois.

  libavogadro/src/extensions/shaders/plasma.vert,
  libavogadro/src/extensions/shaders/gooch.frag,
  libavogadro/src/extensions/shaders/plasma.frag,
  libavogadro/src/extensions/shaders/gooch.vert:
  Copyright (C) 2002-2004 3Dlabs Inc. Ltd.

  testfiles/*:
  Copyright (C) 2006 Jerome Pansanel.

  avogadro/gl2ps/*:
  Copyright (C) 1999-2006 Christophe Geuzaine.

  cmake/modules/MacroEnsureVersion.cmake
  Copyright (C) 2006 David Faure <faure@kde.org>.
  Copyright (C) 2007 Will Stephenson <wstephenson@kde.org>.

  cmake/modules/FindEigen2.cmake:
  Copyright (C) 2006, 2007 Montel Laurent <montel@kde.org>.

  cmake/modules/FindOpenBabel2.cmake
  Copyright (C) 2006, 2007 Carsten Niehaus <cniehaus@gmx.de>.
  Copyright (C) 2008 Marcus D. Hanwell <marcus@cryos.org>.

  debian/*:
  Copyright (C) 2007 Jordan Mantha <mantha@ubuntu.com>.
  Copyright (C) 2008,2009 debichem team <debichem-devel@lists.alioth.debian.org>

License:

**/*: GPL2 (several files), GPL2+

  This program is free software; you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation; either version 2 of the License, or
  (at your option) any later version.

  This program is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.

  You should have received a copy of the GNU General Public License
  along with this program; if not, write to the Free Software Foundation,
  Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301, USA.

  On Debian systems, the complete text of the GNU General Public
  License (latest version) can be found in `/usr/share/common-licenses/GPL'.

avogadro/gl2ps/*,
libavogadro/src/extensions/basisset.cpp,
libavogadro/src/extensions/basisset.h,
libavogadro/src/extensions/gaussianfchk.cpp,
libavogadro/src/extensions/gaussianfchk.h,
libavogadro/src/extensions/mopacaux.cpp,
libavogadro/src/extensions/mopacaux.h,
libavogadro/src/extensions/slaterset.cpp,
libavogadro/src/extensions/slaterset.h,
libavogadro/src/extensions/supercelldialog.cpp,
libavogadro/src/extensions/supercelldialog.h,
libavogadro/src/extensions/vdwsurface.cpp,
libavogadro/src/extensions/vdwsurface.h,
libavogadro/src/meshgenerator.cpp,
libavogadro/src/meshgenerator.h,
libavogadro/src/periodictableview.cpp,
libavogadro/src/periodictableview.h: LGPL2.1+

  This library is free software; you can redistribute it and/or modify
  it under the terms of the GNU Library General Public License as
  published by the Free Software Foundation; either version 2.1 of the
  License, or (at your option) any later version.

  This library is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the GNU
  Lesser General Public License for more details.

  You should have received a copy of the GNU Lesser General Public
  License along with this library; if not, write to the Free Software
  Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA  02110-1301  USA

  On Debian systems, the complete text of the GNU Lesser General Public
  License (latest version) can be found in `/usr/share/common-licenses/LGPL'.

libavogadro/src/extensions/shaders/gooch.frag,
libavogadro/src/extensions/shaders/gooch.vert,
libavogadro/src/extensions/shaders/plasma.frag,
libavogadro/src/extensions/shaders/plasma.vert: BSD-C3

  Redistribution and use in source and binary forms, with or without
  modification, are permitted provided that the following conditions
  are met:

      Redistributions of source code must retain the above copyright
      notice, this list of conditions and the following disclaimer.

      Redistributions in binary form must reproduce the above
      copyright notice, this list of conditions and the following
      disclaimer in the documentation and/or other materials provided
      with the distribution.

      Neither the name of 3Dlabs Inc. Ltd. nor the names of its
      contributors may be used to endorse or promote products derived
      from this software without specific prior written permission.

  THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
  "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
  LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
  FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
  COPYRIGHT HOLDERS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
  INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
  BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
  LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
  CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
  LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
  ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
  POSSIBILITY OF SUCH DAMAGE.

cmake/*: BSD-C3

  Redistribution and use in source and binary forms, with or without
  modification, are permitted provided that the following conditions
  are met:

  1. Redistributions of source code must retain the copyright
     notice, this list of conditions and the following disclaimer.
  2. Redistributions in binary form must reproduce the copyright
     notice, this list of conditions and the following disclaimer in the
     documentation and/or other materials provided with the distribution.
  3. The name of the author may not be used to endorse or promote products
     derived from this software without specific prior written permission.

  THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
  IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
  OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
  IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR ANY DIRECT, INDIRECT,
  INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT
  NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
  DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
  THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
  (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
  THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

testfiles/*:

  Some files in the testfiles directory include license and use restriction
  hints and copyright notices of some commercial and non-disclosure software.
  To our understanding (see http://bugs.debian.org/643921) these texts refer
  to the non-free software programs (like Gaussian) that produced this output
  but not to the file format nor any output file.

==============================================================================

The Debian packaging is
Copyright (C) 2007-2009 Jordan Mantha <mantha@ubuntu.com> and
Copyright (C) 2007-2013 Debichem Team <debichem-devel@lists.alioth.debian.org>
and is licensed under the GPL, see above.