/usr/share/avogadro/fragments/cyclic alkanes/cyclohexane.cml is in avogadro-data 1.0.3-10.1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 | <?xml version="1.0"?>
<molecule xmlns="http://www.xml-cml.org/schema" id="cyclohexane.out">
<atomArray>
<atom id="a1" elementType="C" x3="-1.646800" y3="0.043900" z3="-0.420000"/>
<atom id="a2" elementType="C" x3="-0.924300" y3="1.154300" z3="0.351700"/>
<atom id="a3" elementType="C" x3="0.579900" y3="1.180700" z3="0.033800"/>
<atom id="a4" elementType="H" x3="-1.376700" y3="2.134900" z3="0.117500"/>
<atom id="a5" elementType="H" x3="-1.069800" y3="1.000300" z3="1.438400"/>
<atom id="a6" elementType="C" x3="1.134900" y3="-0.208500" z3="-0.324400"/>
<atom id="a7" elementType="H" x3="0.775100" y3="1.874200" z3="-0.805100"/>
<atom id="a8" elementType="H" x3="1.125800" y3="1.593300" z3="0.902300"/>
<atom id="a9" elementType="C" x3="0.359700" y3="-1.336100" z3="0.368700"/>
<atom id="a10" elementType="H" x3="1.090600" y3="-0.353600" z3="-1.420900"/>
<atom id="a11" elementType="H" x3="2.205300" y3="-0.265000" z3="-0.053700"/>
<atom id="a12" elementType="C" x3="-1.127200" y3="-1.348500" z3="-0.026500"/>
<atom id="a13" elementType="H" x3="0.819500" y3="-2.311800" z3="0.127800"/>
<atom id="a14" elementType="H" x3="0.447800" y3="-1.218300" z3="1.466000"/>
<atom id="a15" elementType="H" x3="-1.292300" y3="-2.047400" z3="-0.867100"/>
<atom id="a16" elementType="H" x3="-1.722300" y3="-1.745300" z3="0.817200"/>
<atom id="a17" elementType="H" x3="-2.735700" y3="0.104200" z3="-0.241800"/>
<atom id="a18" elementType="H" x3="-1.506700" y3="0.199800" z3="-1.507000"/>
</atomArray>
<bondArray>
<bond atomRefs2=" a18 a1" order=" 1"/>
<bond atomRefs2=" a10 a6" order=" 1"/>
<bond atomRefs2=" a15 a12" order=" 1"/>
<bond atomRefs2=" a7 a3" order=" 1"/>
<bond atomRefs2=" a1 a17" order=" 1"/>
<bond atomRefs2=" a1 a12" order=" 1"/>
<bond atomRefs2=" a1 a2" order=" 1"/>
<bond atomRefs2=" a6 a11" order=" 1"/>
<bond atomRefs2=" a6 a3" order=" 1"/>
<bond atomRefs2=" a6 a9" order=" 1"/>
<bond atomRefs2=" a12 a9" order=" 1"/>
<bond atomRefs2=" a12 a16" order=" 1"/>
<bond atomRefs2=" a3 a2" order=" 1"/>
<bond atomRefs2=" a3 a8" order=" 1"/>
<bond atomRefs2=" a4 a2" order=" 1"/>
<bond atomRefs2=" a13 a9" order=" 1"/>
<bond atomRefs2=" a2 a5" order=" 1"/>
<bond atomRefs2=" a9 a14" order=" 1"/>
</bondArray>
</molecule>
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