/usr/share/avogadro/fragments/cyclic alkanes/cyclobutane.cml is in avogadro-data 1.0.3-10.1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 | <?xml version="1.0"?>
<molecule xmlns="http://www.xml-cml.org/schema" id="cyclobutane.out">
<atomArray>
<atom id="a1" elementType="C" x3="-0.935100" y3="-0.035500" z3="0.096700"/>
<atom id="a2" elementType="C" x3="-0.868800" y3="1.507200" z3="-0.005400"/>
<atom id="a3" elementType="C" x3="0.676600" y3="1.437800" z3="-0.052600"/>
<atom id="a4" elementType="H" x3="-1.332900" y3="1.923900" z3="-0.905000"/>
<atom id="a5" elementType="H" x3="-1.273300" y3="2.039800" z3="0.861200"/>
<atom id="a6" elementType="C" x3="0.610100" y3="-0.105200" z3="0.049000"/>
<atom id="a7" elementType="H" x3="1.120100" y3="1.815400" z3="-0.979100"/>
<atom id="a8" elementType="H" x3="1.180000" y3="1.927800" z3="0.786800"/>
<atom id="a9" elementType="H" x3="1.015500" y3="-0.636200" z3="-0.818500"/>
<atom id="a10" elementType="H" x3="1.073900" y3="-0.524100" z3="0.948000"/>
<atom id="a11" elementType="H" x3="-1.379400" y3="-0.411800" z3="1.024100"/>
<atom id="a12" elementType="H" x3="-1.438000" y3="-0.526500" z3="-0.742900"/>
</atomArray>
<bondArray>
<bond atomRefs2=" a7 a3" order=" 1"/>
<bond atomRefs2=" a4 a2" order=" 1"/>
<bond atomRefs2=" a9 a6" order=" 1"/>
<bond atomRefs2=" a12 a1" order=" 1"/>
<bond atomRefs2=" a3 a2" order=" 1"/>
<bond atomRefs2=" a3 a6" order=" 1"/>
<bond atomRefs2=" a3 a8" order=" 1"/>
<bond atomRefs2=" a2 a1" order=" 1"/>
<bond atomRefs2=" a2 a5" order=" 1"/>
<bond atomRefs2=" a6 a1" order=" 1"/>
<bond atomRefs2=" a6 a10" order=" 1"/>
<bond atomRefs2=" a1 a11" order=" 1"/>
</bondArray>
</molecule>
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