/usr/share/avogadro/builder/amino/l-tyr.zmat is in avogadro-data 1.0.3-10.1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | N 0.000000 0.000000 0.000000 0 0 0 -0.244958 N
C 1.461658 0.000000 0.000000 1 0 0 0.091600 CA
C 1.538177 106.652478 0.000000 2 1 0 0.218041 C
O 1.230602 122.922668 340.894490 3 2 1 -0.287197 O
C 1.537798 111.274710 238.724246 2 1 3 -0.003640 CB
H 1.098209 110.553874 322.220086 5 2 1 0.033301 HB1
H 1.098161 110.310355 78.164913 5 2 1 0.033301 HB2
C 1.511562 113.221693 201.659353 5 2 1 -0.045196 CG
C 1.401382 120.857160 256.417067 8 5 2 -0.055064 CD2
H 1.088176 120.640967 358.854167 9 8 5 0.062142 HD2
C 1.395277 120.282152 178.629986 9 8 5 -0.019921 CE2
H 1.086373 120.298075 180.174071 11 9 8 0.065402 HE2
C 1.389775 119.758033 0.601785 11 9 8 0.116879 CZ
C 1.390413 120.850227 359.896421 13 11 9 -0.019921 CE1
H 1.085600 121.365394 179.608623 14 13 11 0.065402 HE1
C 1.396108 119.421973 359.702362 14 13 11 -0.055064 CD1
H 1.089967 119.329656 179.834170 16 14 13 0.062142 HD1
O 1.363211 117.734196 179.845122 13 11 9 -0.506769 OH
H 0.971482 108.546007 183.568957 18 13 11 0.292132 HH
H 1.096925 107.375427 116.219904 2 1 3 0.056017 HA
H 1.016774 117.336714 17.397281 1 2 3 0.141371 H
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