/usr/share/avogadro/builder/amino/l-thr.zmat is in avogadro-data 1.0.3-10.1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | N 0.000000 0.000000 0.000000 0 0 0 -0.242718 N
C 1.465626 0.000000 0.000000 1 0 0 0.113126 CA
C 1.536574 105.991501 0.000000 2 1 0 0.220298 C
O 1.230023 122.996034 333.730560 3 2 1 -0.287112 O
C 2.562283 144.461782 226.751209 2 1 3 -0.037002 CG2
C 1.525379 33.835750 19.971688 5 2 1 0.076258 CB
O 1.435346 106.146797 236.310829 6 5 2 -0.390029 OG1
H 1.095886 143.942191 10.368047 5 2 1 0.025505 HG21
H 1.095697 90.324881 250.957428 5 2 1 0.025505 HG22
H 1.092438 95.799577 142.002886 5 2 1 0.025505 HG23
H 1.096269 108.811300 122.211852 6 5 2 0.061081 HB
H 1.096724 107.138871 116.966001 2 1 3 0.058278 HA
H 0.980479 108.541932 99.771737 7 6 5 0.209848 HG1
H 1.016673 117.297288 24.509154 1 2 3 0.141456 H
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