/usr/share/avogadro/builder/amino/l-glu.zmat is in avogadro-data 1.0.3-10.1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 | N 0.000000 0.000000 0.000000 0 0 0 -0.245273 N
C 1.460580 0.000000 0.000000 1 0 0 0.088159 CA
C 1.545082 106.332371 0.000000 2 1 0 0.217726 C
O 1.231378 122.613212 9.901510 3 2 1 -0.287208 O
C 1.535259 111.362485 236.841253 2 1 3 -0.018906 CB
H 1.097798 111.199819 343.021876 5 2 1 0.029010 HB1
H 1.097368 110.551974 99.634689 5 2 1 0.029010 HB2
C 1.528416 111.432938 222.853026 5 2 1 0.046636 CG
H 1.095108 112.153527 310.061746 8 5 2 0.037803 HG1
H 1.096026 110.179975 68.976780 8 5 2 0.037803 HG2
C 1.500238 110.297716 190.478081 8 5 2 0.304756 CD
O 1.220300 125.431325 62.296244 11 8 5 -0.251021 OE2
O 1.342659 113.305811 242.159235 11 8 5 -0.480610 OE1
H 0.979809 104.915204 179.004722 13 11 8 0.295051 HE1
H 1.017621 116.854610 1.551259 1 2 3 0.141360 H
H 1.096999 106.969691 114.853957 2 1 3 0.055702 HA
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