/usr/share/avogadro/builder/amino/d-tyr.zmat is in avogadro-data 1.0.3-10.1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 | N 0.000000 0.000000 0.000000 0 0 0 -0.244958 N
C 1.480833 0.000000 0.000000 1 0 0 0.091600 CA
C 1.528790 106.214453 0.000000 2 1 0 0.218041 C
O 1.205711 130.378984 55.542040 3 2 1 -0.287197 O
C 1.546546 115.506141 120.238516 2 1 3 -0.003640 CB
H 1.111072 109.874924 187.435781 5 2 1 0.033301 HB1
H 1.110411 110.062040 302.232678 5 2 1 0.033301 HB2
C 1.501288 111.057666 65.667887 5 2 1 -0.045196 CG
C 1.406912 120.233635 255.084816 8 5 2 -0.055064 CD2
H 1.090664 120.006566 359.768808 9 8 5 0.062142 HD2
C 1.391500 120.722244 180.146715 9 8 5 -0.019921 CE2
H 1.088152 121.962416 179.702625 11 9 8 0.065402 HE2
C 1.405748 118.379457 359.936433 11 9 8 0.116879 CZ
C 1.401779 122.162812 0.044131 13 11 9 -0.019921 CE1
H 1.085244 121.108719 179.923895 14 13 11 0.065402 HE1
C 1.396118 118.300278 0.064659 14 13 11 -0.055064 CD1
H 1.090332 119.227292 179.816935 16 14 13 0.062142 HD1
O 1.373933 115.150104 180.035788 13 11 9 -0.506769 OH
H 0.988327 112.215925 180.022664 18 13 11 0.292132 HH
H 1.127794 107.867120 243.306007 2 1 3 0.056017 HA
H 1.017797 110.484171 176.007696 1 2 3 0.141371 H
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