/usr/share/avogadro/builder/amino/d-leu.zmat is in avogadro-data 1.0.3-10.1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | N 0.000000 0.000000 0.000000 0 0 0 -0.245277 N
C 1.486992 0.000000 0.000000 1 0 0 0.087893 CA
C 1.539162 107.764424 0.000000 2 1 0 0.217722 C
O 1.205895 125.278508 158.918115 3 2 1 -0.287208 O
C 1.536111 114.940208 122.689502 2 1 3 -0.026622 HA
H 1.113977 109.147732 197.924489 5 2 1 0.028744 H
H 1.106875 110.274518 312.068484 5 2 1 0.028744 CB
C 1.542464 112.801929 75.861792 5 2 1 -0.044859 HB1
C 1.533459 109.777371 191.375398 8 5 2 -0.062604 HB2
H 1.096299 111.859345 300.121590 9 8 5 0.023234 CG
H 1.096034 111.173945 180.599806 9 8 5 0.023234 HG
H 1.095075 111.849803 60.734059 9 8 5 0.023234 CD1
C 1.533079 111.048548 68.782148 8 5 2 -0.062604 HD11
H 1.128161 108.655622 245.395864 2 1 3 0.055699 HD12
H 1.017211 110.690265 156.416595 1 2 3 0.141360 HD13
H 1.118386 108.980633 309.517345 8 5 2 0.029608 CD2
H 1.095349 111.341696 179.800543 13 8 5 0.023234 HD21
H 1.096829 111.722399 60.231702 13 8 5 0.023234 HD22
H 1.095092 111.835033 300.051037 13 8 5 0.023234 HD23
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