/usr/share/avogadro/builder/amino/d-ile.zmat is in avogadro-data 1.0.3-10.1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 | N 0.000000 0.000000 0.000000 0 0 0 -0.245017 N
C 1.483492 0.000000 0.000000 1 0 0 0.090195 CA
C 1.525817 106.300152 0.000000 2 1 0 0.217982 C
O 1.205566 129.171350 238.032971 3 2 1 -0.287198 O
H 1.126957 107.802225 245.514511 2 1 3 0.055959 CB
H 1.016570 110.775522 174.389878 1 2 3 0.141370 CG1
C 1.557759 115.713684 122.393522 2 1 3 -0.020126 CD1
H 1.119343 108.113661 305.678053 7 2 1 0.031775 HA
C 1.530192 109.989321 187.229867 7 2 1 -0.060551 CG2
H 1.097783 111.096531 186.496097 9 7 2 0.023301 HG11
H 1.096405 112.033231 67.121059 9 7 2 0.023301 HG12
H 1.096691 112.168903 306.142482 9 7 2 0.023301 HD11
C 1.542111 109.965475 64.509342 7 2 1 -0.051443 HD12
H 1.107706 110.374740 314.791664 13 7 2 0.026581 HD13
H 1.108565 109.947373 70.814602 13 7 2 0.026581 H
C 1.526217 111.971397 193.242316 13 7 2 -0.064974 HB
H 1.096166 111.212373 183.822143 16 13 7 0.022987 HG21
H 1.096351 111.745577 63.706641 16 13 7 0.022987 HG22
H 1.097458 111.666837 303.523871 16 13 7 0.022987 HG23
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